The leaderboard groups these as “not a valid scene”. Here they are apart. Each MVS sample gets one outcome; everything but a valid scene scores 0, because Mol* shows nothing for it. Run 2026-10-18, 1 sample per task.
root node).Jump to: outcome breakdown · common messages · failing samples (spec) · failing samples (spec + dossier). Full data: failures_data.json.
Samples per outcome, per model and prompting condition (70 tasks each). Click a count to jump to those samples. The spec run is the leaderboard; the others are the 2×2.
| Model | valid scene | invalid JSON | not an MVS tree | invalid MVS | failed to load | MVS F1 |
|---|---|---|---|---|---|---|
| deepseek/deepseek-v3.2 | 69 | 0 | 0 | 0 | 1 | 0.903 |
| deepseek/deepseek-v4-flash | 65 | 4 | 0 | 1 | 0 | 0.859 |
| claude-haiku-4-5 | 67 | 0 | 0 | 3 | 0 | 0.857 |
| gemini-3.5-flash | 66 | 4 | 0 | 0 | 0 | 0.849 |
| minimax/minimax-m3 | 63 | 5 | 0 | 2 | 0 | 0.817 |
| qwen/qwen3-next-80b-a3b-instruct | 64 | 3 | 0 | 3 | 0 | 0.805 |
| z-ai/glm-5.2 | 63 | 5 | 0 | 1 | 1 | 0.805 |
| meta-llama/llama-4-maverick | 57 | 1 | 0 | 11 | 1 | 0.792 |
| google/gemma-3-27b-it | 57 | 4 | 0 | 9 | 0 | 0.713 |
| moonshotai/kimi-k2.6 | 51 | 18 | 0 | 1 | 0 | 0.657 |
| gpt-5.4-nano | 53 | 15 | 0 | 2 | 0 | 0.654 |
| openai/gpt-oss-120b | 44 | 26 | 0 | 0 | 0 | 0.561 |
| qwen/qwen3-30b-a3b-instruct-2507 | 39 | 28 | 0 | 3 | 0 | 0.519 |
| openai/gpt-oss-20b | 20 | 50 | 0 | 0 | 0 | 0.252 |
| nvidia/nemotron-3-super-120b-a12b | 6 | 64 | 0 | 0 | 0 | 0.078 |
| baseline-rules | 0 | 67 | 3 | 0 | 0 | 0.000 |
| Model | valid scene | invalid JSON | not an MVS tree | invalid MVS | failed to load | MVS F1 |
|---|---|---|---|---|---|---|
| deepseek/deepseek-v3.2 | 68 | 0 | 0 | 2 | 0 | 0.888 |
| deepseek/deepseek-v4-flash | 59 | 11 | 0 | 0 | 0 | 0.778 |
| claude-haiku-4-5 | 65 | 0 | 0 | 5 | 0 | 0.842 |
| gemini-3.5-flash | 63 | 5 | 0 | 2 | 0 | 0.816 |
| minimax/minimax-m3 | 64 | 3 | 0 | 3 | 0 | 0.819 |
| qwen/qwen3-next-80b-a3b-instruct | 64 | 0 | 0 | 6 | 0 | 0.830 |
| z-ai/glm-5.2 | 60 | 8 | 0 | 2 | 0 | 0.783 |
| meta-llama/llama-4-maverick | 58 | 1 | 0 | 11 | 0 | 0.793 |
| google/gemma-3-27b-it | 49 | 9 | 0 | 12 | 0 | 0.654 |
| moonshotai/kimi-k2.6 | 45 | 24 | 0 | 1 | 0 | 0.568 |
| gpt-5.4-nano | 53 | 12 | 0 | 5 | 0 | 0.605 |
| openai/gpt-oss-120b | 46 | 24 | 0 | 0 | 0 | 0.582 |
| qwen/qwen3-30b-a3b-instruct-2507 | 22 | 46 | 0 | 2 | 0 | 0.266 |
| openai/gpt-oss-20b | 17 | 53 | 0 | 0 | 0 | 0.207 |
| nvidia/nemotron-3-super-120b-a12b | 6 | 63 | 0 | 1 | 0 | 0.081 |
| Model | valid scene | invalid JSON | not an MVS tree | invalid MVS | failed to load | MVS F1 |
|---|---|---|---|---|---|---|
| deepseek/deepseek-v3.2 | 0 | 0 | 0 | 70 | 0 | 0.000 |
| claude-haiku-4-5 | 0 | 0 | 0 | 70 | 0 | 0.000 |
| qwen/qwen3-30b-a3b-instruct-2507 | 0 | 15 | 0 | 55 | 0 | 0.000 |
| Model | valid scene | invalid JSON | not an MVS tree | invalid MVS | failed to load | MVS F1 |
|---|---|---|---|---|---|---|
| deepseek/deepseek-v3.2 | 0 | 0 | 0 | 70 | 0 | 0.000 |
| claude-haiku-4-5 | 0 | 2 | 0 | 68 | 0 | 0.000 |
| qwen/qwen3-30b-a3b-instruct-2507 | 0 | 8 | 0 | 62 | 0 | 0.000 |
Mol*’s validator messages for invalid MVS, grouped with quoted names replaced by “…” (click a row for the concrete messages). Counts are issues, across all models; a scene can have several. Mol* stops at the first bad node, so one issue per scene is typical.
| Mol* message | Spec | Spec + dossier | Bare | Bare + dossier | Models |
|---|---|---|---|---|---|
Invalid parameters for node of kind "download": Missing required parameter "url". ×377 | 1 | 2 | 195 | 199 | 5 |
Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_source", "primitives", "primitives_from_uri", "volume", "volume_re… ×63 | 28 | 43 | 0 | 0 | 12 |
Invalid parameters for node of kind "representation": Invalid value for parameter "type": ×6 | 5 | 6 | 0 | 1 | 5 |
Unknown node kind "custom" ×3 | 2 | 1 | 0 | 0 | 1 |
JSON parser errors for invalid JSON, with line/column positions removed. “No JSON object found” is usually an empty response.
| Parser error | Spec | Spec + dossier | Bare | Bare + dossier |
|---|---|---|---|---|
JSON parse error: Expecting ',' delimiter | 198 | 218 | 8 | 6 |
no JSON object found in output | 15 | 27 | 0 | 0 |
JSON parse error: Extra data | 13 | 12 | 7 | 3 |
JSON parse error: Expecting property name enclosed in double quotes | 1 | 1 | 0 | 1 |
JSON parse error: Expecting value | 0 | 1 | 0 | 0 |
int-005 failed to load render failed: Error: FormatErrorPrompt: Show trypsin 3PTB as a grey cartoon and display the interactions between the benzamidine inhibitor and the protein.
Load error: render failed: Error: FormatError
at j_ (file:///home/danbolser/Build/MolBench/molbench/static/molstar/molstar.js:7670:159)
at Cwt (file:///home/danbolser/Build/MolBench/molbench/static/molstar/molstar.js:7677:56875)
at e.f (file:///home/danbolser/Build/MolBench/molbench/static/molstar/molstar.js:7677:56472)
at HJ (file:///home/danbolser/Build/MolBench/molbench/static/molstar/molstar.js:35:61538)
at tG (file:///home/danbolser/Build/MolBench/molbench/static/molstar/molstar.js:35:60775)
at lF.run (file:///home/danbolser/Build/MolBench/molbench/static/molstar/molstar.js:7586:109461)
at r4.runTask (file:///home/danbolser/Build/MolBench/molbench/static/molstar/molstar.js:7586:123836)
at tf (file:///home/danbolser/Build/MolBench/molbench/static/molstar/molstar.js:7677:56495)
at lY (file:///home/danbolser/Build/MolBench/molbench/static/molstar/molstar.js:7675:29405)
at e.loadMvsData (file:///home/danbolser/Build/MolBench/molbench/static/molstar/molstar.js:7713:39371){
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/3ptb.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model"
},
"children": [
{
"kind": "component",
"params": {
"selector": "polymer"
},
"children": [
{
"kind": "representation",
"params": {
"type": "cartoon"
},
"children": [
{
"kind": "color",
"params": {
"color": "gray"
}
}
]
}
]
},
{
"kind": "component",
"params": {
"selector": {
"label_comp_id": "BAM"
},
"custom": {
"molstar_show_non_covalent_interactions": true,
"molstar_non_covalent_interactions_radius_ang": 5
}
}
}
]
}
]
}
]
}
]
}
}gen-cartoon-1hho invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 461 (char 460)Prompt: Load haemoglobin (1HHO) and show the protein as a red cartoon.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 461 (char 460)
{"root": {"kind": "root", "children": [{"kind": "download", "params": {"url": "https://files.rcsb.org/download/1hho.cif"}, "children": [{"kind": "parse", "params": {"format": "mmcif"}, "children": [{"kind": "structure", "params": {"type": "model"}, "children": [{"kind": "component", "params": {"selector": "protein"}, "children": [{"kind": "representation", "params": {"type": "cartoon"}, "children": [{"kind": "color", "params": {"color": "red"}}]}]}]}]}]}]}]}gen-focus-1cbs invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 683 (char 682)Prompt: Load 1CBS; grey cartoon protein, magenta ball-and-stick ligands, and focus the camera on the ligand.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 683 (char 682)
{"root": {"kind": "root", "children": [{"kind": "download", "params": {"url": "https://files.rcsb.org/download/1cbs.cif"}, "children": [{"kind": "parse", "params": {"format": "mmcif"}, "children": [{"kind": "structure", "params": {"type": "model"}, "children": [{"kind": "component", "params": {"selector": "polymer"}, "children": [{"kind": "representation", "params": {"type": "cartoon"}, "children": [{"kind": "color", "params": {"color": "grey"}}]}]}, {"kind": "component", "params": {"selector": "ligand"}, "children": [{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [{"kind": "color", "params": {"color": "magenta"}}]}, {"kind": "focus"}]}]}]}]}]}]}grd-disulfide-1lyz invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 1176 (char 1175)Prompt: Load 1LYZ; protein as grey cartoon, and highlight the disulfide-bonded cysteines as yellow ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 1176 (char 1175)
{"root": {"kind": "root", "children": [{"kind": "download", "params": {"url": "https://files.rcsb.org/download/1lyz.cif"}, "children": [{"kind": "parse", "params": {"format": "mmcif"}, "children": [{"kind": "structure", "params": {"type": "model"}, "children": [{"kind": "component", "params": {"selector": "protein"}, "children": [{"kind": "representation", "params": {"type": "cartoon"}, "children": [{"kind": "color", "params": {"color": "gray"}}]}]}, {"kind": "component", "params": {"selector": [{"auth_asym_id": "A", "auth_seq_id": 6, "auth_comp_id": "CYS"}, {"auth_asym_id": "A", "auth_seq_id": 30, "auth_comp_id": "CYS"}, {"auth_asym_id": "A", "auth_seq_id": 64, "auth_comp_id": "CYS"}, {"auth_asym_id": "A", "auth_seq_id": 76, "auth_comp_id": "CYS"}, {"auth_asym_id": "A", "auth_seq_id": 80, "auth_comp_id": "CYS"}, {"auth_asym_id": "A", "auth_seq_id": 94, "auth_comp_id": "CYS"}, {"auth_asym_id": "A", "auth_seq_id": 115, "auth_comp_id": "CYS"}, {"auth_asym_id": "A", "auth_seq_id": 127, "auth_comp_id": "CYS"}]}, "children": [{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [{"kind": "color", "params": {"color": "yellow"}}]}]}]}]}]}]}]}int-003 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 994 (char 993)Prompt: In trypsin (3PTB), show the protein as a grey cartoon and the catalytic triad (His57, Asp102, Ser195) as ball-and-stick. Draw the two triad hydrogen bonds as dashed lines with their lengths.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 994 (char 993)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/3ptb.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"grey"}}]}]},{"kind":"component","params":{"selector":[{"auth_asym_id":"I","auth_seq_id":57},{"auth_asym_id":"I","auth_seq_id":102},{"auth_asym_id":"I","auth_seq_id":195}]},"children":[{"kind":"representation","params":{"type":"ball_and_stick"}}]},{"kind":"primitives","params":{"color":"green","label_color":"green"},"children":[{"kind":"primitive","params":{"kind":"distance_measurement","start":{"auth_asym_id":"I","auth_seq_id":195,"label_atom_id":"OG"},"end":{"auth_asym_id":"I","auth_seq_id":57,"label_atom_id":"NE2"},"radius":0.06,"dash_length":0.15,"label_template":"{{distance}}"}},{"kind":"primitive","params":{"kind":"distance_measurement","start":{"auth_asym_id":"I","auth_seq_id":57,"label_atom_id":"ND1res-cftr invalid MVS Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_sourcePrompt: show me the CFTR channel
Mol* validator:
Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_source", "primitives", "primitives_from_uri", "volume", "volume_representation"
{
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/5uak.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model",
"model_index": 0
},
"children": [
{
"kind": "component",
"params": {
"selector": "polymer"
},
"children": [
{
"kind": "representation",
"params": {
"type": "cartoon"
},
"children": [
{
"kind": "color",
"params": {
"color": "gray"
}
}
]
}
]
},
{
"kind": "focus",
"params": {}
}
]
}
]
}
]
}
]
}
}res-cftr invalid MVS Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_sourcePrompt: show me the CFTR channel
Mol* validator:
Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_source", "primitives", "primitives_from_uri", "volume", "volume_representation"
{
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/1xmi.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model"
},
"children": [
{
"kind": "component",
"params": {
"selector": "protein"
},
"children": [
{
"kind": "representation",
"params": {
"type": "cartoon"
},
"children": [
{
"kind": "color",
"params": {
"color": "steelblue"
}
}
]
}
]
},
{
"kind": "component",
"params": {
"selector": "ligand"
},
"children": [
{
"kind": "representation",
"params": {
"type": "ball_and_stick"
},
"children": [
{
"kind": "color",
"params": {
"color": "orange"
}
}
]
}
]
},
{
"kind": "focus"
}
]
}
]
}
]
}
]
}
}res-myoglobin invalid MVS Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_sourcePrompt: Show me sperm whale myoglobin
Mol* validator:
Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_source", "primitives", "primitives_from_uri", "volume", "volume_representation"
{
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/1mbn.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model"
},
"children": [
{
"kind": "component",
"params": {
"selector": "protein"
},
"children": [
{
"kind": "representation",
"params": {
"type": "cartoon"
},
"children": [
{
"kind": "color",
"params": {
"color": "steelblue"
}
}
]
}
]
},
{
"kind": "component",
"params": {
"selector": "ligand"
},
"children": [
{
"kind": "representation",
"params": {
"type": "ball_and_stick"
},
"children": [
{
"kind": "color",
"params": {
"color": "red"
}
}
]
}
]
},
{
"kind": "focus",
"params": {}
}
]
}
]
}
]
}
]
}
}res-pcsk9 invalid MVS Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_sourcePrompt: show the structure of PCSK9
Mol* validator:
Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_source", "primitives", "primitives_from_uri", "volume", "volume_representation"
{
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/1mwq.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model"
},
"children": [
{
"kind": "component",
"params": {
"selector": "protein"
},
"children": [
{
"kind": "representation",
"params": {
"type": "cartoon"
},
"children": [
{
"kind": "color",
"params": {
"color": "steelblue"
}
}
]
}
]
},
{
"kind": "component",
"params": {
"selector": "ligand"
},
"children": [
{
"kind": "representation",
"params": {
"type": "ball_and_stick"
},
"children": [
{
"kind": "color",
"params": {
"color": "orange"
}
}
]
}
]
},
{
"kind": "focus"
}
]
}
]
}
]
}
]
}
}gen-range-3ptb invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 459 (char 458)Prompt: Load 3PTB; protein as grey cartoon, and show residues 50-110 of chain A as orange ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 459 (char 458)
{"root": {"kind": "root", "children": [{"kind": "download", "params": {"url": "https://files.rcsb.org/download/3ptb.cif"}, "children": [{"kind": "parse", "params": {"format": "mmcif"}, "children": [{"kind": "structure", "params": {"type": "model"}, "children": [{"kind": "component", "params": {"selector": "protein"}, "children": [{"kind": "representation", "params": {"type": "cartoon"}, "children": [{"kind": "color", "params": {"color": "gray"}}]}]}, "{"kind": "component", "params": {"selector": {"auth_asym_id": "A", "beg_auth_seq_id": 50, "end_auth_seq_id": 110}}, "children": [{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [{"kind": "color", "params": {"color": "orange"}}]}]}]}]}]}]}}int-001 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 184 (char 183)Prompt: In oxymyoglobin 1A6M, show the protein as a grey cartoon, His64 and the bound O2 as ball-and-stick, and draw the hydrogen bond from His64 NE2 to the O2 molecule's terminal oxygen (atom O2) as a dashed line labelled with its length.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 184 (char 183)
{"root": {"kind": "root", "children": [{"kind": "download", "params": {"url": "https://files.rcsb.org/download/1a6m.cif"}, "children": [{"kind": "parse", "params": {"format": "mmcif"}, "children": [{"kind": "structure", "params": {"type":int-002 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 184 (char 183)Prompt: Load 1A6M with the protein as a grey cartoon. Show the heme and the proximal histidine as ball-and-stick and measure the distance from the heme iron to the histidine's coordinating nitrogen.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 184 (char 183)
Answering with only the JSON object, strictly matching the instructions:
{"root": {"kind": "root", "children": [{"kind": "download", "params": {"url": "https://files.rcsb.org/download/1a6m.cif"}, "children": [{"kind": "parse", "params": {"format": "mmcif"}, "int-003 invalid JSON JSON parse error: Expecting property name enclosed in double quotes: line 1 column 2 (char 1)Prompt: In trypsin (3PTB), show the protein as a grey cartoon and the catalytic triad (His57, Asp102, Ser195) as ball-and-stick. Draw the two triad hydrogen bonds as dashed lines with their lengths.
Parser: JSON parse error: Expecting property name enclosed in double quotes: line 1 column 2 (char 1)
```
Wait, `label_template` in the spec says `"{{distance}}"` is replaced. The example says `"label_template": "{{distance}}"`. Let's just use `"{{distance}}"` or `"{{distance}} Å"`. The spec example has `{{distance}}` and the text says `"{{distance}}" is replaced by it`. Let's usemvs-004 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 588 (char 587)Prompt: Load HIV-1 protease (1HVR); protein as grey cartoon, the bound inhibitor as magenta ball-and-stick, and focus the camera on the inhibitor.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 588 (char 587)
{"root": {"kind": "root", "children": [{"kind": "download", "params": {"url": "https://files.rcsb.org/download/1hvr.cif"}, "children": [{"kind": "parse", "params": {"format": "mmcif"}, "children": [{"kind": "structure", "params": {"type": "model"}, "children": [{"kind": "component", "params": {"selector": "polymer"}, "children": [{"kind": "representation", "params": {"type": "cartoon"}, "children": [{"kind": "color", "params": {"color": "gray"}}]}]}, {"kind": "component", "params": {"selector": "ligand"}, "children": [{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [{"kind": "color", "params": {"color":hotspots-1tup invalid JSON JSON parse error: Expecting ',' delimiter: line 22 column 1 (char 883)Prompt: In p53 (PDB 1TUP), chain A, highlight the 6 mutational hotspot residues — the positions carrying the most pathogenic ClinVar variants — as red spheres.
Parser: JSON parse error: Expecting ',' delimiter: line 22 column 1 (char 883)
{"root": {"kind": "root", "children": [
{"kind": "download", "params": {"url": "https://files.rcsb.org/download/1tup.cif"},
"children": [
{"kind": "parse", "params": {"format": "mmcif"}, "children": [
{"kind": "structure", "params": {"type": "model"}, "children": [
{"kind": "component", "params": {"selector": [
{"auth_asym_id": "A", "auth_seq_id": 175},
{"auth_asym_id": "A", "auth_seq_id": 245},
{"auth_asym_id": "A", "auth_seq_id": 248},
{"auth_asym_id": "A", "auth_seq_id": 249},
{"auth_asym_id": "A", "auth_seq_id": 273},
{"auth_asym_id": "A", "auth_seq_id": 282}
]}, "children": [
{"kind": "representation", "params": {"type": "spacefill"}, "children": [
{"kind": "color", "params": {"color": "red"}},
{"kind": "focus"}
]}
]}
]}]}
]}
]}
]}gen-ions-1hho invalid JSON JSON parse error: Expecting ',' delimiter: line 13 column 1 (char 745)Prompt: Load 1HHO; protein as grey cartoon, and show the ions as purple spheres.
Parser: JSON parse error: Expecting ',' delimiter: line 13 column 1 (char 745)
{"root": {"kind": "root", "children": [
{"kind": "download", "params": {"url": "https://files.rcsb.org/download/1hho.cif"}, "children": [
{"kind": "parse", "params": {"format": "mmcif"}, "children": [
{"kind": "structure", "params": {"type": "model"}, "children": [
{"kind": "component", "params": {"selector": "polymer"}, "children": [
{"kind": "representation", "params": {"type": "cartoon"}, "children": [
{"kind": "color", "params": {"color": "gray"}}]}]},
{"kind": "component", "params": {"selector": "ion"}, "children": [
{"kind": "representation", "params": {"type": "spacefill"}, "children": [
{"kind": "color", "params": {"color": "purple"}}]}]}
]}]}
]}]}
]}int-001 invalid JSON no JSON object found in outputPrompt: In oxymyoglobin 1A6M, show the protein as a grey cartoon, His64 and the bound O2 as ball-and-stick, and draw the hydrogen bond from His64 NE2 to the O2 molecule's terminal oxygen (atom O2) as a dashed line labelled with its length.
Parser: no JSON object found in output
The model returned an empty response.
int-003 invalid JSON JSON parse error: Expecting ',' delimiter: line 31 column 1 (char 1807)Prompt: In trypsin (3PTB), show the protein as a grey cartoon and the catalytic triad (His57, Asp102, Ser195) as ball-and-stick. Draw the two triad hydrogen bonds as dashed lines with their lengths.
Parser: JSON parse error: Expecting ',' delimiter: line 31 column 1 (char 1807)
{"root": {"kind": "root", "children": [
{"kind": "download", "params": {"url": "https://files.rcsb.org/download/3ptb.cif"},
"children": [
{"kind": "parse", "params": {"format": "mmcif"}, "children": [
{"kind": "structure", "params": {"type": "model"}, "children": [
{"kind": "component", "params": {"selector": "polymer"}, "children": [
{"kind": "representation", "params": {"type": "cartoon"}, "children": [
{"kind": "color", "params": {"color": "gray"}}]}]},
{"kind": "component", "params": {"selector": [
{"auth_asym_id": "A", "auth_seq_id": 57},
{"auth_asym_id": "A", "auth_seq_id": 102},
{"auth_asym_id": "A", "auth_seq_id": 195}
]}, "children": [
{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [
{"kind": "color", "params": {"color": "#FFFFFF"},
"custom": {"molstar_color_theme_name": "element-symbol"}}]}]},
{"kind": "primitives", "params": {"color": "yellow", "label_color": "yellow"}, "children": [
{"kind": "primitive", "params": {"kind": "distance_measurement",
"start": {"auth_asym_id": "A", "auth_seq_id": 57, "label_atom_id": "NE2"},
"end": {"auth_asym_id": "A", "auth_seq_id": 195, "label_atom_id": "OG"},
"color": "yellow", "radius": 0.06, "dash_length": 0.15,
"label_template": "{{distance}}"}},
{"kind": "primitive", "params": {"kind": "distance_measurement",
"start": {"auth_asym_id": "A", "auth_seq_id": 102, "label_atom_id": "OD1"},
"end": {"auth_asym_id": "A", "auth_seq_id": 57, "label_atom_id": "ND1"},
"color": "yellow", "radius": 0.06, "dash_length": 0.15,
"label_template": "{{distance}}"}}
]}
]}]}
]}]}
]}}res-cftr invalid MVS Node of kind "focus" cannot appear as a child of "representation". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_sPrompt: show me the CFTR channel
Mol* validator:
Node of kind "focus" cannot appear as a child of "representation". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_source", "primitives", "primitives_from_uri", "volume", "volume_representation"
{
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/5uak.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model"
},
"children": [
{
"kind": "component",
"params": {
"selector": "polymer"
},
"children": [
{
"kind": "representation",
"params": {
"type": "cartoon"
},
"children": [
{
"kind": "color",
"params": {
"color": "steelblue"
}
},
{
"kind": "focus",
"params": {
"radius": 120,
"radius_extra": 30
}
}
]
}
]
}
]
}
]
}
]
}
]
}
}res-lysozyme invalid MVS Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_sourcePrompt: Show me hen egg white lysozyme
Mol* validator:
Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_source", "primitives", "primitives_from_uri", "volume", "volume_representation"
{
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/1aki.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model"
},
"children": [
{
"kind": "component",
"params": {
"selector": "polymer"
},
"children": [
{
"kind": "representation",
"params": {
"type": "cartoon"
},
"children": [
{
"kind": "color",
"params": {
"color": "white"
},
"custom": {
"molstar_color_theme_name": "sequence-id"
}
}
]
}
]
},
{
"kind": "focus",
"params": {
"radius": 25
}
}
]
}
]
}
]
}
]
}
}gen-ligands-1cbs invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 663 (char 662)Prompt: Load 1CBS; show the protein as a grey cartoon and the ligands as purple ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 663 (char 662)
{"root": {"kind": "root", "children": [{"kind": "download", "params": {"url": "https://files.rcsb.org/download/1cbs.cif"}, "children": [{"kind": "parse", "params": {"format": "mmcif"}, "children": [{"kind": "structure", "params": {"type": "model"}, "children": [{"kind": "component", "params": {"selector": "polymer"}, "children": [{"kind": "representation", "params": {"type": "cartoon"}, "children": [{"kind": "color", "params": {"color": "gray"}}]}]}, {"kind": "component", "params": {"selector": "ligand"}, "children": [{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [{"kind": "color", "params": {"color": "purple"}}]}]}]}]}]}]}gen-ligands-1hho invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 660 (char 659)Prompt: Load 1HHO; show the protein as a grey cartoon and the ligands as red ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 660 (char 659)
{"root": {"kind": "root", "children": [{"kind": "download", "params": {"url": "https://files.rcsb.org/download/1hho.cif"}, "children": [{"kind": "parse", "params": {"format": "mmcif"}, "children": [{"kind": "structure", "params": {"type": "model"}, "children": [{"kind": "component", "params": {"selector": "polymer"}, "children": [{"kind": "representation", "params": {"type": "cartoon"}, "children": [{"kind": "color", "params": {"color": "gray"}}]}]}, {"kind": "component", "params": {"selector": "ligand"}, "children": [{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [{"kind": "color", "params": {"color": "red"}}]}]}]}]}]}]}grd-ligand-1hho-hem invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 677 (char 676)Prompt: Load 1HHO; show the protein as a grey cartoon and the HEM as orange ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 677 (char 676)
{"root": {"kind": "root", "children": [{"kind": "download", "params": {"url": "https://files.rcsb.org/download/1hho.cif"}, "children": [{"kind": "parse", "params": {"format": "mmcif"}, "children": [{"kind": "structure", "params": {"type": "model"}, "children": [{"kind": "component", "params": {"selector": "polymer"}, "children": [{"kind": "representation", "params": {"type": "cartoon"}, "children": [{"kind": "color", "params": {"color": "gray"}}]}]}, {"kind": "component", "params": {"selector": {"label_comp_id": "HEM"}}, "children": [{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [{"kind": "color", "params": {"color": "orange"}}]}]}]}]}]}}named-1tup-248 invalid MVS Invalid parameters for node of kind "component": Missing required parameter "selector".Prompt: In p53 (PDB 1TUP), chain A, select the residue at canonical UniProt position 248 and show it as blue ball-and-stick.
Mol* validator:
Invalid parameters for node of kind "component": Missing required parameter "selector".
{
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/1tup.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model"
},
"children": [
{
"kind": "component",
"params": {
"auth_asym_id": "A",
"auth_seq_id": 248
},
"children": [
{
"kind": "representation",
"params": {
"type": "ball_and_stick"
},
"children": [
{
"kind": "color",
"params": {
"color": "blue"
}
}
]
}
]
}
]
}
]
}
]
}
]
}
}gen-focus-1cbs invalid MVS Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_sourcePrompt: Load 1CBS; grey cartoon protein, magenta ball-and-stick ligands, and focus the camera on the ligand.
Mol* validator:
Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_source", "primitives", "primitives_from_uri", "volume", "volume_representation"
{
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/1cbs.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model"
},
"children": [
{
"kind": "component",
"params": {
"selector": "polymer"
},
"children": [
{
"kind": "representation",
"params": {
"type": "cartoon"
},
"children": [
{
"kind": "color",
"params": {
"color": "gray"
}
}
]
}
]
},
{
"kind": "component",
"params": {
"selector": "ligand"
},
"children": [
{
"kind": "representation",
"params": {
"type": "ball_and_stick"
},
"children": [
{
"kind": "color",
"params": {
"color": "magenta"
}
}
]
}
]
},
{
"kind": "focus",
"params": {
"radius": 5
}
}
]
}
]
}
]
}
]
}
}gen-focus-1hho invalid MVS Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_sourcePrompt: Load 1HHO; grey cartoon protein, magenta ball-and-stick ligands, and focus the camera on the ligand.
Mol* validator:
Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_source", "primitives", "primitives_from_uri", "volume", "volume_representation"
{
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/1hho.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model"
},
"children": [
{
"kind": "component",
"params": {
"selector": "polymer"
},
"children": [
{
"kind": "representation",
"params": {
"type": "cartoon"
},
"children": [
{
"kind": "color",
"params": {
"color": "gray"
}
}
]
}
]
},
{
"kind": "component",
"params": {
"selector": "ligand"
},
"children": [
{
"kind": "representation",
"params": {
"type": "ball_and_stick"
},
"children": [
{
"kind": "color",
"params": {
"color": "magenta"
}
}
]
}
]
},
{
"kind": "focus",
"params": {
"radius": 5
}
}
]
}
]
}
]
}
]
}
}mvs-005 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 427 (char 426)Prompt: Load insulin (4INS) and render the protein as a steel-blue molecular surface.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 427 (char 426)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/4ins.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"protein"},"children":[{"kind":"representation","params":{"type":"surface"},"children":[{"kind":"color","params":{"color":"steelblue"}}]}]}]}]}]}}gen-focus-2hhb invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 596 (char 595)Prompt: Load 2HHB; grey cartoon protein, magenta ball-and-stick ligands, and focus the camera on the ligand.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 596 (char 595)
```json
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/2hhb.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"protein"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":"ligand"},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"magenta"}]},{"kind":"focus","params":{}}]}]}]}]}]}}
```grd-ligand-1hho-hem invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 614 (char 613)Prompt: Load 1HHO; show the protein as a grey cartoon and the HEM as orange ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 614 (char 613)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1hho.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"label_comp_id":"HEM"},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"orange"}}]}]}]}]}]}]}}grd-ligand-2hhb-hem invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 621 (char 620)Prompt: Load 2HHB; show the protein as a grey cartoon and the HEM as orange ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 621 (char 620)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/2hhb.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"protein"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"label_comp_id":"HEM"}},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"orange"}}]}]}]}]}]}}int-003 invalid JSON JSON parse error: Expecting ',' delimiter: line 26 column 1 (char 1667)Prompt: In trypsin (3PTB), show the protein as a grey cartoon and the catalytic triad (His57, Asp102, Ser195) as ball-and-stick. Draw the two triad hydrogen bonds as dashed lines with their lengths.
Parser: JSON parse error: Expecting ',' delimiter: line 26 column 1 (char 1667)
{"root": {"kind": "root", "children": [
{"kind": "download", "params": {"url": "https://files.rcsb.org/download/3ptb.cif"},
"children": [
{"kind": "parse", "params": {"format": "mmcif"}, "children": [
{"kind": "structure", "params": {"type": "model"}, "children": [
{"kind": "component", "params": {"selector": "protein"}, "children": [
{"kind": "representation", "params": {"type": "cartoon"}, "children": [
{"kind": "color", "params": {"color": "gray"}}]}]},
{"kind": "component", "params": {"selector": [
{"auth_asym_id": "E", "auth_seq_id": 57},
{"auth_asym_id": "E", "auth_seq_id": 102},
{"auth_asym_id": "E", "auth_seq_id": 195}
]}, "children": [
{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [
{"kind": "color", "params": {"color": "#FFCC00"}}]}]},
{"kind": "primitives", "params": {"color": "yellow", "label_color": "yellow"}, "children": [
{"kind": "primitive", "params": {"kind": "distance_measurement",
"start": {"auth_asym_id": "E", "auth_seq_id": 195, "label_atom_id": "OG"},
"end": {"auth_asym_id": "E", "auth_seq_id": 57, "label_atom_id": "NE2"},
"radius": 0.06, "dash_length": 0.15, "label_template": "{{distance}} Å"}}]},
{"kind": "primitive", "params": {"kind": "distance_measurement",
"start": {"auth_asym_id": "E", "auth_seq_id": 57, "label_atom_id": "ND1"},
"end": {"auth_asym_id": "E", "auth_seq_id": 102, "label_atom_id": "OD2"},
"radius": 0.06, "dash_length": 0.15, "label_template": "{{distance}} Å"}}]}
]}]}]}
]}}res-cftr invalid MVS Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_sourcePrompt: show me the CFTR channel
Mol* validator:
Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_source", "primitives", "primitives_from_uri", "volume", "volume_representation"
{
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/6msm.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model"
},
"children": [
{
"kind": "component",
"params": {
"selector": "protein"
},
"children": [
{
"kind": "representation",
"params": {
"type": "cartoon"
},
"children": [
{
"kind": "color",
"params": {
"color": "gray"
},
"custom": {
"molstar_color_theme_name": "secondary-structure"
}
}
]
}
]
},
{
"kind": "component",
"params": {
"selector": "ligand"
},
"children": [
{
"kind": "representation",
"params": {
"type": "ball_and_stick"
},
"children": [
{
"kind": "color",
"params": {
"color": "orange"
}
}
]
}
]
},
{
"kind": "component",
"params": {
"selector": "ion"
},
"children": [
{
"kind": "representation",
"params": {
"type": "ball_and_stick"
},
"children": [
{
"kind": "color",
"params": {
"color": "steelblue"
}
}
]
}
]
},
{
"kind": "focus"
}
]
}
]
}
]
}
]
}
}int-004 failed to load render failed: Error: FormatErrorPrompt: Load 1A6M with the protein as a grey cartoon and show all the non-covalent interactions (hydrogen bonds, metal contacts) around the bound oxygen molecule.
Load error: render failed: Error: FormatError
at j_ (file:///home/danbolser/Build/MolBench/molbench/static/molstar/molstar.js:7670:159)
at Cwt (file:///home/danbolser/Build/MolBench/molbench/static/molstar/molstar.js:7677:56875)
at e.f (file:///home/danbolser/Build/MolBench/molbench/static/molstar/molstar.js:7677:56472)
at HJ (file:///home/danbolser/Build/MolBench/molbench/static/molstar/molstar.js:35:61538)
at tG (file:///home/danbolser/Build/MolBench/molbench/static/molstar/molstar.js:35:60775)
at lF.run (file:///home/danbolser/Build/MolBench/molbench/static/molstar/molstar.js:7586:109461)
at r4.runTask (file:///home/danbolser/Build/MolBench/molbench/static/molstar/molstar.js:7586:123836)
at tf (file:///home/danbolser/Build/MolBench/molbench/static/molstar/molstar.js:7677:56495)
at lY (file:///home/danbolser/Build/MolBench/molbench/static/molstar/molstar.js:7675:29405)
at e.loadMvsData (file:///home/danbolser/Build/MolBench/molbench/static/molstar/molstar.js:7713:39371){
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/1a6m.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model"
},
"children": [
{
"kind": "component",
"params": {
"selector": "polymer"
},
"children": [
{
"kind": "representation",
"params": {
"type": "cartoon"
},
"children": [
{
"kind": "color",
"params": {
"color": "gray"
}
}
]
}
]
},
{
"kind": "component",
"params": {
"selector": {
"label_comp_id": "OXY"
},
"custom": {
"molstar_show_non_covalent_interactions": true,
"molstar_non_covalent_interactions_radius_ang": 5
}
}
}
]
}
]
}
]
}
]
}
}res-cftr invalid JSON JSON parse error: Expecting ',' delimiter: line 58 column 2 (char 1532)Prompt: show me the CFTR channel
Parser: JSON parse error: Expecting ',' delimiter: line 58 column 2 (char 1532)
```json
{
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/5j3i.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model"
},
"children": [
{
"kind": "component",
"params": {
"selector": "polymer"
},
"children": [
{
"kind": "representation",
"params": {
"type": "cartoon"
},
"children": [
{
"kind": "color",
"params": {
"color": "steelblue"
},
"custom": {
"molstar_color_theme_name": "chain-id"
}
}
]
}
]
},
{
"kind": "focus"
}
]
}
]
}
]
}
]
}
```clinvar-1tup-D281 invalid MVS Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_sourcePrompt: In p53 (PDB 1TUP), chain A, highlight the residue affected by the pathogenic ClinVar variant D281Y as red ball-and-stick.
Mol* validator:
Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_source", "primitives", "primitives_from_uri", "volume", "volume_representation"
{
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/1tup.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model"
},
"children": [
{
"kind": "component",
"params": {
"selector": "polymer"
},
"children": [
{
"kind": "representation",
"params": {
"type": "cartoon"
},
"children": [
{
"kind": "color",
"params": {
"color": "lightgrey"
}
}
]
}
]
},
{
"kind": "component",
"params": {
"selector": {
"auth_asym_id": "A",
"auth_seq_id": 281
}
},
"children": [
{
"kind": "representation",
"params": {
"type": "ball_and_stick"
},
"children": [
{
"kind": "color",
"params": {
"color": "red"
}
}
]
}
]
},
{
"kind": "focus",
"params": {
"radius": 10
},
"children": [
{
"kind": "component",
"params": {
"selector": {
"auth_asym_id": "A",
"auth_seq_id": 281
}
}
}
]
}
]
}
]
}
]
}
]
}
}clinvar-1tup-F109 invalid MVS Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_sourcePrompt: In p53 (PDB 1TUP), chain A, highlight the residue affected by the pathogenic ClinVar variant F109V as red ball-and-stick.
Mol* validator:
Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_source", "primitives", "primitives_from_uri", "volume", "volume_representation"
{
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/1tup.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model"
},
"children": [
{
"kind": "component",
"params": {
"selector": "polymer"
},
"children": [
{
"kind": "representation",
"params": {
"type": "cartoon"
},
"children": [
{
"kind": "color",
"params": {
"color": "lightgrey"
}
}
]
}
]
},
{
"kind": "component",
"params": {
"selector": {
"auth_asym_id": "A",
"auth_seq_id": 109
}
},
"children": [
{
"kind": "representation",
"params": {
"type": "ball_and_stick"
},
"children": [
{
"kind": "color",
"params": {
"color": "red"
}
}
]
}
]
},
{
"kind": "focus",
"params": {
"radius": 5
}
}
]
}
]
}
]
}
]
}
}clinvar-1tup-N239 invalid MVS Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_sourcePrompt: In p53 (PDB 1TUP), chain A, highlight the residue affected by the pathogenic ClinVar variant N239T as red ball-and-stick.
Mol* validator:
Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_source", "primitives", "primitives_from_uri", "volume", "volume_representation"
{
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/1tup.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model"
},
"children": [
{
"kind": "component",
"params": {
"selector": "polymer"
},
"children": [
{
"kind": "representation",
"params": {
"type": "cartoon"
},
"children": [
{
"kind": "color",
"params": {
"color": "grey"
}
}
]
}
]
},
{
"kind": "component",
"params": {
"selector": {
"auth_asym_id": "A",
"auth_seq_id": 239
}
},
"children": [
{
"kind": "representation",
"params": {
"type": "ball_and_stick"
},
"children": [
{
"kind": "color",
"params": {
"color": "red"
}
}
]
}
]
},
{
"kind": "focus",
"params": {},
"children": []
}
]
}
]
}
]
}
]
}
}clinvar-1tup-S215 invalid MVS Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_sourcePrompt: In p53 (PDB 1TUP), chain A, highlight the residue affected by the pathogenic ClinVar variant S215T as red ball-and-stick.
Mol* validator:
Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_source", "primitives", "primitives_from_uri", "volume", "volume_representation"
{
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/1tup.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model"
},
"children": [
{
"kind": "component",
"params": {
"selector": {
"auth_asym_id": "A",
"auth_seq_id": 215
}
},
"children": [
{
"kind": "representation",
"params": {
"type": "ball_and_stick"
},
"children": [
{
"kind": "color",
"params": {
"color": "red"
}
}
]
}
]
},
{
"kind": "component",
"params": {
"selector": "polymer"
},
"children": [
{
"kind": "representation",
"params": {
"type": "cartoon"
},
"children": [
{
"kind": "color",
"params": {
"color": "gray"
}
}
]
}
]
},
{
"kind": "focus",
"params": {
"radius": 10
}
}
]
}
]
}
]
}
]
}
}hotspots-1tup invalid MVS Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_sourcePrompt: In p53 (PDB 1TUP), chain A, highlight the 6 mutational hotspot residues — the positions carrying the most pathogenic ClinVar variants — as red spheres.
Mol* validator:
Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_source", "primitives", "primitives_from_uri", "volume", "volume_representation"
{
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/1tup.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model"
},
"children": [
{
"kind": "component",
"params": {
"selector": "polymer"
},
"children": [
{
"kind": "representation",
"params": {
"type": "cartoon"
},
"children": [
{
"kind": "color",
"params": {
"color": "gray"
}
}
]
}
]
},
{
"kind": "component",
"params": {
"selector": [
{
"auth_asym_id": "A",
"auth_seq_id": 175
},
{
"auth_asym_id": "A",
"auth_seq_id": 245
},
{
"auth_asym_id": "A",
"auth_seq_id": 248
},
{
"auth_asym_id": "A",
"auth_seq_id": 249
},
{
"auth_asym_id": "A",
"auth_seq_id": 273
},
{
"auth_asym_id": "A",
"auth_seq_id": 281
}
]
},
"children": [
{
"kind": "representation",
"params": {
"type": "spacefill"
},
"children": [
{
"kind": "color",
"params": {
"color": "red"
}
}
]
}
]
},
{
"kind": "focus",
"params": {
"radius": 20
}
}
]
}
]
}
]
}
]
}
}gen-surface-3ptb invalid MVS Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_sourcePrompt: Load 3PTB; render the protein as a plum molecular surface.
Mol* validator:
Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_source", "primitives", "primitives_from_uri", "volume", "volume_representation"
{
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/3ptb.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model"
},
"children": [
{
"kind": "component",
"params": {
"selector": "protein"
},
"children": [
{
"kind": "representation",
"params": {
"type": "surface"
},
"children": [
{
"kind": "color",
"params": {
"color": "plum"
}
}
]
}
]
},
{
"kind": "focus"
}
]
}
]
}
]
}
]
}
}res-gfp invalid MVS Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_sourcePrompt: show green fluorescent protein from Aequorea victoria
Mol* validator:
Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_source", "primitives", "primitives_from_uri", "volume", "volume_representation"
{
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/1hgp.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model"
},
"children": [
{
"kind": "component",
"params": {
"selector": "polymer"
},
"children": [
{
"kind": "representation",
"params": {
"type": "cartoon"
},
"children": [
{
"kind": "color",
"params": {
"color": "green"
}
}
]
}
]
},
{
"kind": "focus"
}
]
}
]
}
]
}
]
}
}res-lysozyme invalid MVS Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_sourcePrompt: Show me hen egg white lysozyme
Mol* validator:
Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_source", "primitives", "primitives_from_uri", "volume", "volume_representation"
{
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/1eze.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model"
},
"children": [
{
"kind": "component",
"params": {
"selector": "polymer"
},
"children": [
{
"kind": "representation",
"params": {
"type": "cartoon"
},
"children": [
{
"kind": "color",
"params": {
"color": "steelblue"
}
}
]
}
]
},
{
"kind": "focus"
}
]
}
]
}
]
}
]
}
}res-myoglobin invalid MVS Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_sourcePrompt: Show me sperm whale myoglobin
Mol* validator:
Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_source", "primitives", "primitives_from_uri", "volume", "volume_representation"
{
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/1wnm.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model"
},
"children": [
{
"kind": "component",
"params": {
"selector": "protein"
},
"children": [
{
"kind": "representation",
"params": {
"type": "cartoon"
},
"children": [
{
"kind": "color",
"params": {
"color": "steelblue"
}
}
]
}
]
},
{
"kind": "component",
"params": {
"selector": "ligand"
},
"children": [
{
"kind": "representation",
"params": {
"type": "ball_and_stick"
},
"children": [
{
"kind": "color",
"params": {
"color": "orange"
}
}
]
}
]
},
{
"kind": "focus"
}
]
}
]
}
]
}
]
}
}res-pcsk9 invalid MVS Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_sourcePrompt: show the structure of PCSK9
Mol* validator:
Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_source", "primitives", "primitives_from_uri", "volume", "volume_representation"
{
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/4k1u.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model"
},
"children": [
{
"kind": "component",
"params": {
"selector": "polymer"
},
"children": [
{
"kind": "representation",
"params": {
"type": "cartoon"
},
"children": [
{
"kind": "color",
"params": {
"color": "steelblue"
}
}
]
}
]
},
{
"kind": "focus"
}
]
}
]
}
]
}
]
}
}res-pde5a invalid MVS Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_sourcePrompt: I wanna see a structure of PDE5A
Mol* validator:
Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_source", "primitives", "primitives_from_uri", "volume", "volume_representation"
{
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/1TUP.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model"
},
"children": [
{
"kind": "component",
"params": {
"selector": "polymer"
},
"children": [
{
"kind": "representation",
"params": {
"type": "cartoon"
},
"children": [
{
"kind": "color",
"params": {
"color": "steelblue"
}
}
]
}
]
},
{
"kind": "component",
"params": {
"selector": "ligand"
},
"children": [
{
"kind": "representation",
"params": {
"type": "ball_and_stick"
},
"children": [
{
"kind": "color",
"params": {
"color": "orange"
}
}
]
}
]
},
{
"kind": "focus"
}
]
}
]
}
]
}
]
}
}int-005 failed to load render failed: Error: FormatErrorPrompt: Show trypsin 3PTB as a grey cartoon and display the interactions between the benzamidine inhibitor and the protein.
Load error: render failed: Error: FormatError
at j_ (file:///home/danbolser/Build/MolBench/molbench/static/molstar/molstar.js:7670:159)
at Cwt (file:///home/danbolser/Build/MolBench/molbench/static/molstar/molstar.js:7677:56875)
at e.f (file:///home/danbolser/Build/MolBench/molbench/static/molstar/molstar.js:7677:56472)
at HJ (file:///home/danbolser/Build/MolBench/molbench/static/molstar/molstar.js:35:61538)
at tG (file:///home/danbolser/Build/MolBench/molbench/static/molstar/molstar.js:35:60775)
at lF.run (file:///home/danbolser/Build/MolBench/molbench/static/molstar/molstar.js:7586:109461)
at r4.runTask (file:///home/danbolser/Build/MolBench/molbench/static/molstar/molstar.js:7586:123836)
at tf (file:///home/danbolser/Build/MolBench/molbench/static/molstar/molstar.js:7677:56495)
at lY (file:///home/danbolser/Build/MolBench/molbench/static/molstar/molstar.js:7675:29405)
at e.loadMvsData (file:///home/danbolser/Build/MolBench/molbench/static/molstar/molstar.js:7713:39371){
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/3ptb.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model"
},
"children": [
{
"kind": "component",
"params": {
"selector": "polymer"
},
"children": [
{
"kind": "representation",
"params": {
"type": "cartoon"
},
"children": [
{
"kind": "color",
"params": {
"color": "grey"
}
}
]
}
]
},
{
"kind": "component",
"params": {
"selector": "ligand",
"custom": {
"molstar_show_non_covalent_interactions": true,
"molstar_non_covalent_interactions_radius_ang": 5
}
}
}
]
}
]
}
]
}
]
}
}mvs-004 invalid JSON JSON parse error: Expecting ',' delimiter: line 15 column 1 (char 850)Prompt: Load HIV-1 protease (1HVR); protein as grey cartoon, the bound inhibitor as magenta ball-and-stick, and focus the camera on the inhibitor.
Parser: JSON parse error: Expecting ',' delimiter: line 15 column 1 (char 850)
```json
{"root": {"kind": "root", "children": [
{"kind": "download", "params": {"url": "https://files.rcsb.org/download/1hvr.cif"},
"children": [
{"kind": "parse", "params": {"format": "mmcif"}, "children": [
{"kind": "structure", "params": {"type": "model"}, "children": [
{"kind": "component", "params": {"selector": "polymer"}, "children": [
{"kind": "representation", "params": {"type": "cartoon"}, "children": [
{"kind": "color", "params": {"color": "gray"}}]}]},
{"kind": "component", "params": {"selector": "ligand"}, "children": [
{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [
{"kind": "color", "params": {"color": "magenta"}}]},
{"kind": "focus", "params": {"radius": 5}}]}]},
{"kind": "focus", "params": {"radius": 5}}
]}]}]}
]}}
```gen-chain-1hho invalid JSON JSON parse error: Expecting ',' delimiter: line 12 column 1 (char 659)Prompt: Load 1HHO; show everything as a grey cartoon, then colour chain A red.
Parser: JSON parse error: Expecting ',' delimiter: line 12 column 1 (char 659)
```json
{"root": {"kind": "root", "children": [
{"kind": "download", "params": {"url": "https://files.rcsb.org/download/1hho.cif"},
"children": [
{"kind": "parse", "params": {"format": "mmcif"}, "children": [
{"kind": "structure", "params": {"type": "model"}, "children": [
{"kind": "component", "params": {"selector": "all"}, "children": [
{"kind": "representation", "params": {"type": "cartoon"}, "children": [
{"kind": "color", "params": {"color": "gray"}}]}]},
{"kind": "component", "params": {"selector": {"auth_asym_id": "A"}}, "children": [
{"kind": "color", "params": {"color": "red"}}]}]}
]}]}]}
]}}
```gen-focus-2hhb invalid JSON JSON parse error: Expecting ',' delimiter: line 18 column 3 (char 822)Prompt: Load 2HHB; grey cartoon protein, magenta ball-and-stick ligands, and focus the camera on the ligand.
Parser: JSON parse error: Expecting ',' delimiter: line 18 column 3 (char 822)
```json
{"root": {"kind": "root", "children": [
{"kind": "download", "params": {"url": "https://files.rcsb.org/download/2hhb.cif"},
"children": [
{"kind": "parse", "params": {"format": "mmcif"}, "children": [
{"kind": "structure", "params": {"type": "model"}, "children": [
{"kind": "component", "params": {"selector": "polymer"}, "children": [
{"kind": "representation", "params": {"type": "cartoon"}, "children": [
{"kind": "color", "params": {"color": "gray"}}]}
]},
{"kind": "component", "params": {"selector": "ligand"}, "children": [
{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [
{"kind": "color", "params": {"color": "magenta"}}]}
]},
{"kind": "focus", "params": {"radius": 5}}
]}
]}
]}
]}
```int-003 invalid JSON JSON parse error: Expecting ',' delimiter: line 22 column 1 (char 1624)Prompt: In trypsin (3PTB), show the protein as a grey cartoon and the catalytic triad (His57, Asp102, Ser195) as ball-and-stick. Draw the two triad hydrogen bonds as dashed lines with their lengths.
Parser: JSON parse error: Expecting ',' delimiter: line 22 column 1 (char 1624)
```json
{"root": {"kind": "root", "children": [
{"kind": "download", "params": {"url": "https://files.rcsb.org/download/3ptb.cif"},
"children": [
{"kind": "parse", "params": {"format": "mmcif"}, "children": [
{"kind": "structure", "params": {"type": "model"}, "children": [
{"kind": "component", "params": {"selector": "polymer"}, "children": [
{"kind": "representation", "params": {"type": "cartoon"}, "children": [
{"kind": "color", "params": {"color": "gray"}}]}]},
{"kind": "component", "params": {"selector": [{"auth_asym_id": "A", "auth_seq_id": 57}, {"auth_asym_id": "A", "auth_seq_id": 102}, {"auth_asym_id": "A", "auth_seq_id": 195}]}, "children": [
{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [
{"kind": "color", "params": {"color": "orange"}}]}]},
{"kind": "primitives", "params": {"color": "yellow", "label_color": "yellow"}, "children": [
{"kind": "primitive", "params": {"kind": "distance_measurement",
"start": {"auth_asym_id": "A", "auth_seq_id": 57, "label_atom_id": "NE2"},
"end": {"auth_asym_id": "A", "auth_seq_id": 195, "label_atom_id": "OG"},
"radius": 0.06, "dash_length": 0.15, "label_template": "{{distance}}"}}]},
{"kind": "primitive", "params": {"kind": "distance_measurement",
"start": {"auth_asym_id": "A", "auth_seq_id": 102, "label_atom_id": "OD1"},
"end": {"auth_asym_id": "A", "auth_seq_id": 195, "label_atom_id": "OG"},
"radius": 0.06, "dash_length": 0.15, "label_template": "{{distance}}"}}]}
]}]}]}
]}}
```hotspots-1tup invalid MVS Invalid parameters for node of kind "representation": Invalid value for parameter "type":Prompt: In p53 (PDB 1TUP), chain A, highlight the 6 mutational hotspot residues — the positions carrying the most pathogenic ClinVar variants — as red spheres.
Mol* validator:
Invalid parameters for node of kind "representation":
Invalid value for parameter "type":
"sphere" is not a valid value for literal type ("cartoon" | "backbone" | "ball_and_stick" | "line" | "spacefill" | "carbohydrate" | "surface" | "putty"){
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/1tup.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model"
},
"children": [
{
"kind": "component",
"params": {
"selector": [
{
"auth_asym_id": "A",
"auth_seq_id": 135
},
{
"auth_asym_id": "A",
"auth_seq_id": 136
},
{
"auth_asym_id": "A",
"auth_seq_id": 175
},
{
"auth_asym_id": "A",
"auth_seq_id": 248
},
{
"auth_asym_id": "A",
"auth_seq_id": 273
},
{
"auth_asym_id": "A",
"auth_seq_id": 307
}
]
},
"children": [
{
"kind": "representation",
"params": {
"type": "sphere",
"size_factor": 0.4
},
"children": [
{
"kind": "color",
"params": {
"color": "red"
}
}
]
}
]
}
]
}
]
}
]
}
]
}
}gen-focus-1cbs invalid MVS Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_sourcePrompt: Load 1CBS; grey cartoon protein, magenta ball-and-stick ligands, and focus the camera on the ligand.
Mol* validator:
Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_source", "primitives", "primitives_from_uri", "volume", "volume_representation"
{
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/1cbs.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model"
},
"children": [
{
"kind": "component",
"params": {
"selector": "polymer"
},
"children": [
{
"kind": "representation",
"params": {
"type": "cartoon"
},
"children": [
{
"kind": "color",
"params": {
"color": "gray"
}
}
]
}
]
},
{
"kind": "component",
"params": {
"selector": "ligand"
},
"children": [
{
"kind": "representation",
"params": {
"type": "ball_and_stick"
},
"children": [
{
"kind": "color",
"params": {
"color": "magenta"
}
}
]
}
]
},
{
"kind": "focus",
"params": {
"radius": 5
}
}
]
}
]
}
]
}
]
}
}gen-focus-1hho invalid MVS Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_sourcePrompt: Load 1HHO; grey cartoon protein, magenta ball-and-stick ligands, and focus the camera on the ligand.
Mol* validator:
Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_source", "primitives", "primitives_from_uri", "volume", "volume_representation"
{
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/1hho.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model"
},
"children": [
{
"kind": "component",
"params": {
"selector": "polymer"
},
"children": [
{
"kind": "representation",
"params": {
"type": "cartoon"
},
"children": [
{
"kind": "color",
"params": {
"color": "gray"
}
}
]
}
]
},
{
"kind": "component",
"params": {
"selector": "ligand"
},
"children": [
{
"kind": "representation",
"params": {
"type": "ball_and_stick"
},
"children": [
{
"kind": "color",
"params": {
"color": "magenta"
}
}
]
}
]
},
{
"kind": "focus",
"params": {
"radius": 5
}
}
]
}
]
}
]
}
]
}
}gen-focus-3ptb invalid MVS Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_sourcePrompt: Load 3PTB; grey cartoon protein, magenta ball-and-stick ligands, and focus the camera on the ligand.
Mol* validator:
Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_source", "primitives", "primitives_from_uri", "volume", "volume_representation"
{
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/3ptb.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model"
},
"children": [
{
"kind": "component",
"params": {
"selector": "polymer"
},
"children": [
{
"kind": "representation",
"params": {
"type": "cartoon"
},
"children": [
{
"kind": "color",
"params": {
"color": "gray"
}
}
]
}
]
},
{
"kind": "component",
"params": {
"selector": "ligand"
},
"children": [
{
"kind": "representation",
"params": {
"type": "ball_and_stick"
},
"children": [
{
"kind": "color",
"params": {
"color": "magenta"
}
}
]
}
]
},
{
"kind": "focus",
"params": {
"radius": 5.0
}
}
]
}
]
}
]
}
]
}
}gen-ions-1hho invalid MVS Invalid parameters for node of kind "representation": Invalid value for parameter "type":Prompt: Load 1HHO; protein as grey cartoon, and show the ions as purple spheres.
Mol* validator:
Invalid parameters for node of kind "representation":
Invalid value for parameter "type":
"sphere" is not a valid value for literal type ("cartoon" | "backbone" | "ball_and_stick" | "line" | "spacefill" | "carbohydrate" | "surface" | "putty"){
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/1hho.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model"
},
"children": [
{
"kind": "component",
"params": {
"selector": "polymer"
},
"children": [
{
"kind": "representation",
"params": {
"type": "cartoon"
},
"children": [
{
"kind": "color",
"params": {
"color": "gray"
}
}
]
}
]
},
{
"kind": "component",
"params": {
"selector": "ion"
},
"children": [
{
"kind": "representation",
"params": {
"type": "sphere"
},
"children": [
{
"kind": "color",
"params": {
"color": "purple"
}
}
]
}
]
}
]
}
]
}
]
}
]
}
}gen-ions-3ptb invalid MVS Invalid parameters for node of kind "representation": Invalid value for parameter "type":Prompt: Load 3PTB; protein as grey cartoon, and show the ions as purple spheres.
Mol* validator:
Invalid parameters for node of kind "representation":
Invalid value for parameter "type":
"sphere" is not a valid value for literal type ("cartoon" | "backbone" | "ball_and_stick" | "line" | "spacefill" | "carbohydrate" | "surface" | "putty"){
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/3ptb.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model"
},
"children": [
{
"kind": "component",
"params": {
"selector": "polymer"
},
"children": [
{
"kind": "representation",
"params": {
"type": "cartoon"
},
"children": [
{
"kind": "color",
"params": {
"color": "gray"
}
}
]
}
]
},
{
"kind": "component",
"params": {
"selector": "ion"
},
"children": [
{
"kind": "representation",
"params": {
"type": "sphere"
},
"children": [
{
"kind": "color",
"params": {
"color": "purple"
}
}
]
}
]
}
]
}
]
}
]
}
]
}
}grd-ligand-3ptb-ca invalid MVS Invalid parameters for node of kind "component": Invalid value for parameter "selector":Prompt: Load 3PTB; show the protein as a grey cartoon and the CA as orange ball-and-stick.
Mol* validator:
Invalid parameters for node of kind "component":
Invalid value for parameter "selector":
"CA" is not a valid value for literal type ("all" | "polymer" | "protein" | "nucleic" | "branched" | "ligand" | "ion" | "water" | "coarse")
Invalid value "CA" supplied to : (("all" | "polymer" | "protein" | "nucleic" | "branched" | "ligand" | "ion" | "water" | "coarse") | { label_entity_id?: string, label_asym_id?: string, auth_asym_id?: string, label_seq_id?: Integer, auth_seq_id?: Integer, pdbx_PDB_ins_code?: string, beg_label_seq_id?: Integer, end_label_seq_id?: Integer, beg_auth_seq_id?: Integer, end_auth_seq_id?: Integer, label_comp_id?: string, auth_comp_id?: string, residue_index?: Integer, label_atom_id?: string, auth_atom_id?: string, type_symbol?: string, atom_id?: Integer, atom_index?: Integer, instance_id?: string } | Array<{ label_entity_id?: string, label_asym_id?: string, auth_asym_id?: string, label_seq_id?: Integer, auth_seq_id?: Integer, pdbx_PDB_ins_code?: string, beg_label_seq_id?: Integer, end_label_seq_id?: Integer, beg_auth_seq_id?: Integer, end_auth_seq_id?: Integer, label_comp_id?: string, auth_comp_id?: string, residue_index?: Integer, label_atom_id?: string, auth_atom_id?: string, type_symbol?: string, atom_id?: Integer, atom_index?: Integer, instance_id?: string }>)/1: { label_entity_id?: string, label_asym_id?: string, auth_asym_id?: string, label_seq_id?: Integer, auth_seq_id?: Integer, pdbx_PDB_ins_code?: string, beg_label_seq_id?: Integer, end_label_seq_id?: Integer, beg_auth_seq_id?: Integer, end_auth_seq_id?: Integer, label_comp_id?: string, auth_comp_id?: string, residue_index?: Integer, label_atom_id?: string, auth_atom_id?: string, type_symbol?: string, atom_id?: Integer, atom_index?: Integer, instance_id?: string }
Invalid value "CA" supplied to : (("all" | "polymer" | "protein" | "nucleic" | "branched" | "ligand" | "ion" | "water" | "coarse") | { label_entity_id?: string, label_asym_id?: string, auth_asym_id?: string, label_seq_id?: Integer, auth_seq_id?: Integer, pdbx_PDB_ins_code?: string, beg_label_seq_id?: Integer, end_label_seq_id?: Integer, beg_auth_seq_id?: Integer, end_auth_seq_id?: Integer, label_comp_id?: string, auth_comp_id?: string, residue_index?: Integer, label_atom_id?: string, auth_atom_id?: string, type_symbol?: string, atom_id?: Integer, atom_index?: Integer, instance_id?: string } | Array<{ label_entity_id?: string, label_asym_id?: string, auth_asym_id?: string, label_seq_id?: Integer, auth_seq_id?: Integer, pdbx_PDB_ins_code?: string, beg_label_seq_id?: Integer, end_label_seq_id?: Integer, beg_auth_seq_id?: Integer, end_auth_seq_id?: Integer, label_comp_id?: string, auth_comp_id?: string, residue_index?: Integer, label_atom_id?: string, auth_atom_id?: string, type_symbol?: string, atom_id?: Integer, atom_index?: Integer, instance_id?: string }>)/2: Array<{ label_entity_id?: string, label_asym_id?: string, auth_asym_id?: string, label_seq_id?: Integer, auth_seq_id?: Integer, pdbx_PDB_ins_code?: string, beg_label_seq_id?: Integer, end_label_seq_id?: Integer, beg_auth_seq_id?: Integer, end_auth_seq_id?: Integer, label_comp_id?: string, auth_comp_id?: string, residue_index?: Integer, label_atom_id?: string, auth_atom_id?: string, type_symbol?: string, atom_id?: Integer, atom_index?: Integer, instance_id?: string }>{
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/3ptb.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model"
},
"children": [
{
"kind": "component",
"params": {
"selector": "polymer"
},
"children": [
{
"kind": "representation",
"params": {
"type": "cartoon"
},
"children": [
{
"kind": "color",
"params": {
"color": "gray"
}
}
]
}
]
},
{
"kind": "component",
"params": {
"selector": "CA"
},
"children": [
{
"kind": "representation",
"params": {
"type": "ball_and_stick"
},
"children": [
{
"kind": "color",
"params": {
"color": "orange"
}
}
]
}
]
}
]
}
]
}
]
}
]
}
}int-004 invalid MVS Unknown node kind "custom"Prompt: Load 1A6M with the protein as a grey cartoon and show all the non-covalent interactions (hydrogen bonds, metal contacts) around the bound oxygen molecule.
Mol* validator:
Unknown node kind "custom"
{
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/1a6m.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model"
},
"children": [
{
"kind": "component",
"params": {
"selector": "polymer"
},
"children": [
{
"kind": "representation",
"params": {
"type": "cartoon"
},
"children": [
{
"kind": "color",
"params": {
"color": "gray"
}
}
]
}
]
},
{
"kind": "component",
"params": {
"selector": "ligand"
},
"children": [
{
"kind": "representation",
"params": {
"type": "ball_and_stick"
}
}
]
},
{
"kind": "component",
"params": {
"selector": "ligand",
"auth_comp_id": "OXY"
},
"children": [
{
"kind": "custom",
"params": {
"molstar_show_non_covalent_interactions": true,
"molstar_non_covalent_interactions_radius_ang": 5
}
}
]
}
]
}
]
}
]
}
]
}
}int-005 invalid MVS Unknown node kind "custom"Prompt: Show trypsin 3PTB as a grey cartoon and display the interactions between the benzamidine inhibitor and the protein.
Mol* validator:
Unknown node kind "custom"
{
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/3ptb.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model"
},
"children": [
{
"kind": "component",
"params": {
"selector": "polymer"
},
"children": [
{
"kind": "representation",
"params": {
"type": "cartoon"
},
"children": [
{
"kind": "color",
"params": {
"color": "gray"
}
}
]
}
]
},
{
"kind": "component",
"params": {
"selector": "ligand",
"model_index": 0
},
"children": [
{
"kind": "representation",
"params": {
"type": "ball_and_stick"
}
},
{
"kind": "custom",
"params": {
"molstar_show_non_covalent_interactions": true,
"molstar_non_covalent_interactions_radius_ang": 5
}
}
]
}
]
}
]
}
]
}
]
}
}mvs-004 invalid JSON no JSON object found in outputPrompt: Load HIV-1 protease (1HVR); protein as grey cartoon, the bound inhibitor as magenta ball-and-stick, and focus the camera on the inhibitor.
Parser: no JSON object found in output
The model returned an empty response.
clinvar-1tup-D281 invalid JSON no JSON object found in outputPrompt: In p53 (PDB 1TUP), chain A, highlight the residue affected by the pathogenic ClinVar variant D281Y as red ball-and-stick.
Parser: no JSON object found in output
The model returned an empty response.
gen-chain-1hho invalid JSON no JSON object found in outputPrompt: Load 1HHO; show everything as a grey cartoon, then colour chain A red.
Parser: no JSON object found in output
The model returned an empty response.
gen-chain-4ins invalid JSON JSON parse error: Expecting ',' delimiter: line 12 column 5 (char 750)Prompt: Load 4INS; show everything as a grey cartoon, then colour chain B blue.
Parser: JSON parse error: Expecting ',' delimiter: line 12 column 5 (char 750)
{"root": {"kind": "root", "children": [
{"kind": "download", "params": {"url": "https://files.rcsb.org/download/4ins.cif"}, "children": [
{"kind": "parse", "params": {"format": "mmcif"}, "children": [
{"kind": "structure", "params": {"type": "model"}, "children": [
{"kind": "component", "params": {"selector": "all"}, "children": [
{"kind": "representation", "params": {"type": "cartoon"}, "children": [
{"kind": "color", "params": {"color": "grey"}}]}]},
{"kind": "component", "params": {"selector": {"auth_asym_id": "B"}}, "children": [
{"kind": "representation", "params": {"type": "cartoon"}, "children": [
{"kind": "color", "params": {"color": "blue"}}]}]}
]}]}
]}}
]}}gen-focus-3ptb invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 636 (char 635)Prompt: Load 3PTB; grey cartoon protein, magenta ball-and-stick ligands, and focus the camera on the ligand.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 636 (char 635)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/3ptb.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":"ligand"},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"magenta"}}]},{"kind":"focus","params":{}}]}]}]}]}}gen-ligands-2hhb invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 604 (char 603)Prompt: Load 2HHB; show the protein as a grey cartoon and the ligands as teal ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 604 (char 603)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/2hhb.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":"ligand"},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"teal"}}]}]}]}]}]}}gen-range-1hho invalid JSON JSON parse error: Expecting ',' delimiter: line 16 column 8 (char 833)Prompt: Load 1HHO; protein as grey cartoon, and show residues 30-90 of chain A as orange ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 16 column 8 (char 833)
{"root": {"kind": "root", "children": [
{"kind": "download", "params": {"url": "https://files.rcsb.org/download/1hho.cif"},
"children": [
{"kind": "parse", "params": {"format": "mmcif"}, "children": [
{"kind": "structure", "params": {"type": "model"}, "children": [
{"kind": "component", "params": {"selector": "polymer"}, "children": [
{"kind": "representation", "params": {"type": "cartoon"}, "children": [
{"kind": "color", "params": {"color": "gray"}}
]}
]},
{"kind": "component", "params": {"selector": {"auth_asym_id": "A", "beg_auth_seq_id": 30, "end_auth_seq_id": 90}}, "children": [
{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [
{"kind": "color", "params": {"color": "orange"}}
]}
]}
]}}
]}
]}}gen-range-2hhb invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 720 (char 719)Prompt: Load 2HHB; protein as grey cartoon, and show residues 10-70 of chain B as orange ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 720 (char 719)
{"root": {"kind": "root", "children": [{"kind": "download", "params": {"url": "https://files.rcsb.org/download/2hhb.cif"}, "children": [{"kind": "parse", "params": {"format": "mmcif"}, "children": [{"kind": "structure", "params": {"type": "model"}, "children": [{"kind": "component", "params": {"selector": "polymer"}, "children": [{"kind": "representation", "params": {"type": "cartoon"}, "children": [{"kind": "color", "params": {"color": "gray"}}]}]}, {"kind": "component", "params": {"selector": {"auth_asym_id": "B", "beg_auth_seq_id": 10, "end_auth_seq_id": 70}}, "children": [{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [{"kind": "color", "params": {"color": "orange"}}]}]}]}]}]}}]}}gen-range-3ptb invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 721 (char 720)Prompt: Load 3PTB; protein as grey cartoon, and show residues 50-110 of chain A as orange ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 721 (char 720)
{"root": {"kind": "root", "children": [{"kind": "download", "params": {"url": "https://files.rcsb.org/download/3ptb.cif"}, "children": [{"kind": "parse", "params": {"format": "mmcif"}, "children": [{"kind": "structure", "params": {"type": "model"}, "children": [{"kind": "component", "params": {"selector": "polymer"}, "children": [{"kind": "representation", "params": {"type": "cartoon"}, "children": [{"kind": "color", "params": {"color": "gray"}}]}]}, {"kind": "component", "params": {"selector": {"auth_asym_id": "A", "beg_auth_seq_id": 50, "end_auth_seq_id": 110}}, "children": [{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [{"kind": "color", "params": {"color": "orange"}}]}]}]}]}]}}]}}gen-range-4ins invalid JSON JSON parse error: Expecting ',' delimiter: line 16 column 8 (char 832)Prompt: Load 4INS; protein as grey cartoon, and show residues 5-25 of chain B as orange ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 16 column 8 (char 832)
{"root": {"kind": "root", "children": [
{"kind": "download", "params": {"url": "https://files.rcsb.org/download/4ins.cif"},
"children": [
{"kind": "parse", "params": {"format": "mmcif"}, "children": [
{"kind": "structure", "params": {"type": "model"}, "children": [
{"kind": "component", "params": {"selector": "polymer"}, "children": [
{"kind": "representation", "params": {"type": "cartoon"}, "children": [
{"kind": "color", "params": {"color": "gray"}}
]}
]},
{"kind": "component", "params": {"selector": {"auth_asym_id": "B", "beg_auth_seq_id": 5, "end_auth_seq_id": 25}}, "children": [
{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [
{"kind": "color", "params": {"color": "orange"}}
]}
]}
]}}
]}
]}}grd-disulfide-3ptb invalid JSON no JSON object found in outputPrompt: Load 3PTB; protein as grey cartoon, and highlight the disulfide-bonded cysteines as yellow ball-and-stick.
Parser: no JSON object found in output
The model returned an empty response.
grd-disulfide-4ins invalid JSON no JSON object found in outputPrompt: Load 4INS; protein as grey cartoon, and highlight the disulfide-bonded cysteines as yellow ball-and-stick.
Parser: no JSON object found in output
The model returned an empty response.
grd-ligand-3ptb-ca invalid JSON no JSON object found in outputPrompt: Load 3PTB; show the protein as a grey cartoon and the CA as orange ball-and-stick.
Parser: no JSON object found in output
The model returned an empty response.
int-001 invalid JSON no JSON object found in outputPrompt: In oxymyoglobin 1A6M, show the protein as a grey cartoon, His64 and the bound O2 as ball-and-stick, and draw the hydrogen bond from His64 NE2 to the O2 molecule's terminal oxygen (atom O2) as a dashed line labelled with its length.
Parser: no JSON object found in output
The model returned an empty response.
int-002 invalid JSON no JSON object found in outputPrompt: Load 1A6M with the protein as a grey cartoon. Show the heme and the proximal histidine as ball-and-stick and measure the distance from the heme iron to the histidine's coordinating nitrogen.
Parser: no JSON object found in output
The model returned an empty response.
res-cftr invalid JSON no JSON object found in outputPrompt: show me the CFTR channel
Parser: no JSON object found in output
The model returned an empty response.
res-pcsk9 invalid JSON no JSON object found in outputPrompt: show the structure of PCSK9
Parser: no JSON object found in output
The model returned an empty response.
res-pde5a invalid JSON no JSON object found in outputPrompt: I wanna see a structure of PDE5A
Parser: no JSON object found in output
The model returned an empty response.
named-1tup-143 invalid MVS Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_sourcePrompt: In p53 (PDB 1TUP), chain A, select the residue at canonical UniProt position 143 and show it as blue ball-and-stick.
Mol* validator:
Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_source", "primitives", "primitives_from_uri", "volume", "volume_representation"
{
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/1tup.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model"
},
"children": [
{
"kind": "component",
"params": {
"selector": {
"auth_asym_id": "A",
"auth_seq_id": 143
}
},
"children": [
{
"kind": "representation",
"params": {
"type": "ball_and_stick"
},
"children": [
{
"kind": "color",
"params": {
"color": "blue"
}
}
]
}
]
},
{
"kind": "focus",
"params": {}
}
]
}
]
}
]
}
]
}
}mvs-001 invalid JSON JSON parse error: Extra data: line 1 column 457 (char 456)Prompt: Load haemoglobin (PDB 1HHO) and show the protein as a grey cartoon.
Parser: JSON parse error: Extra data: line 1 column 457 (char 456)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1HHO.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model","model_index":0},"children":[{"kind":"component","params":{"selector":"protein"},"children":[{"kind":"representation","params":{"type":"cartoon","size_factor":1},"children":[{"kind":"color","params":{"color":"gray"}}]}]}]}]}]}]}}}mvs-003 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 892 (char 891)Prompt: Load hen egg-white lysozyme (1LYZ) as a grey cartoon, and show the two catalytic residues Glu35 and Asp52 on chain A as red ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 892 (char 891)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1LYZ.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon","size_factor":1},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"A","auth_seq_id":35}},"children":[{"kind":"representation","params":{"type":"ball_and_stick","size_factor":1},"children":[{"kind":"color","params":{"color":"red"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"A","auth_seq_id":52}},"children":[{"kind":"representation","params":{"type":"ball_and_stick","size_factor":1},"children":[{"kind":"color","params":{"color":"red"}}]}]}]}]}]}]}]}}clinvar-1tup-F109 invalid JSON JSON parse error: Extra data: line 1 column 535 (char 534)Prompt: In p53 (PDB 1TUP), chain A, highlight the residue affected by the pathogenic ClinVar variant F109V as red ball-and-stick.
Parser: JSON parse error: Extra data: line 1 column 535 (char 534)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1tup.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model","model_index":0},"children":[{"kind":"component","params":{"selector":{"auth_asym_id":"A","auth_seq_id":109}},"children":[{"kind":"representation","params":{"type":"ball_and_stick","size_factor":1},"children":[{"kind":"color","params":{"color":"red"},"custom":{"molstar_color_theme_name":null}}]}]}]}]}]}]}}}clinvar-1tup-N239 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 505 (char 504)Prompt: In p53 (PDB 1TUP), chain A, highlight the residue affected by the pathogenic ClinVar variant N239T as red ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 505 (char 504)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1tup.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model","model_index":0},"children":[{"kind":"component","params":{"selector":{"auth_asym_id":"A","auth_seq_id":239}},"children":[{"kind":"representation","params":{"type":"ball_and_stick","size_factor":1},"children":[{"kind":"color","params":{"color":"red"},"children":[]}]}]}]}]}]}]}]}}clinvar-1tup-S215 invalid JSON JSON parse error: Extra data: line 1 column 504 (char 503)Prompt: In p53 (PDB 1TUP), chain A, highlight the residue affected by the pathogenic ClinVar variant S215T as red ball-and-stick.
Parser: JSON parse error: Extra data: line 1 column 504 (char 503)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1tup.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model","model_index":0},"children":[{"kind":"component","params":{"selector":{"auth_asym_id":"A","auth_seq_id":215}},"children":[{"kind":"representation","params":{"type":"ball_and_stick","size_factor":1},"children":[{"kind":"color","params":{"color":"red"},"custom":{}}]}]}]}]}]}]}}}hotspots-1tup invalid JSON JSON parse error: Extra data: line 1 column 1867 (char 1866)Prompt: In p53 (PDB 1TUP), chain A, highlight the 6 mutational hotspot residues — the positions carrying the most pathogenic ClinVar variants — as red spheres.
Parser: JSON parse error: Extra data: line 1 column 1867 (char 1866)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1TUP.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model","model_index":0},"children":[{"kind":"component","params":{"selector":{"auth_asym_id":"A","auth_seq_id":175}},"children":[{"kind":"representation","params":{"type":"spacefill","size_factor":1.0},"children":[{"kind":"color","params":{"color":"red"},"custom":{"molstar_theme":"single-color"} }]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"A","auth_seq_id":248}},"children":[{"kind":"representation","params":{"type":"spacefill","size_factor":1.0},"children":[{"kind":"color","params":{"color":"red"},"custom":{"molstar_theme":"single-color"} }]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"A","auth_seq_id":249}},"children":[{"kind":"representation","params":{"type":"spacefill","size_factor":1.0},"children":[{"kind":"color","params":{"color":"red"},"custom":{"molstar_theme":"single-color"} }]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"A","auth_seq_id":273}},"children":[{"kind":"representation","params":{"type":"spacefill","size_factor":1.0},"children":[{"kind":"color","params":{"color":"red"},"custom":{"molstar_theme":"single-color"} }]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"A","auth_seq_id":282}},"children":[{"kind":"representation","params":{"type":"spacefill","size_factor":1.0},"children":[{"kind":"color","params":{"color":"red"},"custom":{"molstar_theme":"single-color"} }]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"A","auth_seq_id":286}},"children":[{"kind":"representation","params":{"type":"spacefill","size_factor":1.0},"children":[{"kind":"color","params":{"color":"red"},"custom":{"molstar_theme":"single-color"} }]}]}]}]}]}]}}]}gen-cartoon-1hho invalid JSON JSON parse error: Extra data: line 1 column 440 (char 439)Prompt: Load haemoglobin (1HHO) and show the protein as a red cartoon.
Parser: JSON parse error: Extra data: line 1 column 440 (char 439)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1hho.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"protein"},"children":[{"kind":"representation","params":{"type":"cartoon","size_factor":1},"children":[{"kind":"color","params":{"color":"red"}}]}]}]}]}]}]}}}gen-chain-2hhb invalid JSON JSON parse error: Extra data: line 1 column 660 (char 659)Prompt: Load 2HHB; show everything as a grey cartoon, then colour chain B teal.
Parser: JSON parse error: Extra data: line 1 column 660 (char 659)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/2hhb.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model","model_index":0},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon","size_factor":1},"children":[{"kind":"color","params":{"color":"gray"}},{"kind":"component","params":{"selector":{"auth_asym_id":"B"}},"children":[{"kind":"representation","params":{"type":"cartoon","size_factor":1},"children":[{"kind":"color","params":{"color":"teal"}}]}]}]}]}]}]}]}]}}}gen-chain-4ins invalid JSON JSON parse error: Extra data: line 1 column 644 (char 643)Prompt: Load 4INS; show everything as a grey cartoon, then colour chain B blue.
Parser: JSON parse error: Extra data: line 1 column 644 (char 643)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/4ins.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon","size_factor":1},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"B"}},"children":[{"kind":"representation","params":{"type":"cartoon","size_factor":1},"children":[{"kind":"color","params":{"color":"blue"}}]}]}]}]}]}]}}}gen-surface-1cbs invalid JSON JSON parse error: Extra data: line 1 column 462 (char 461)Prompt: Load 1CBS; render the protein as a steelblue molecular surface.
Parser: JSON parse error: Extra data: line 1 column 462 (char 461)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1CBS.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model","model_index":0},"children":[{"kind":"component","params":{"selector":"protein"},"children":[{"kind":"representation","params":{"type":"surface","size_factor":1},"children":[{"kind":"color","params":{"color":"steelblue"}}]}]}]}]}]}]}}}int-001 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 1240 (char 1239)Prompt: In oxymyoglobin 1A6M, show the protein as a grey cartoon, His64 and the bound O2 as ball-and-stick, and draw the hydrogen bond from His64 NE2 to the O2 molecule's terminal oxygen (atom O2) as a dashed line labelled with its length.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 1240 (char 1239)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1a6m.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"protein"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":[{"auth_asym_id":"A","auth_seq_id":64,"label_comp_id":"HIS"}]},"children":[{"kind":"representation","params":{"type":"ball_and_stick","size_factor":1},"children":[{"kind":"color","params":{"color":"orange"}}]}]},{"kind":"component","params":{"selector":[{"label_comp_id":"O2"}]},"children":[{"kind":"representation","params":{"type":"ball_and_stick","size_factor":1},"children":[{"kind":"color","params":{"color":"red"}}]}]},{"kind":"primitives","params":{"color":"yellow","label_color":"yellow"},"children":[{"kind":"primitive","params":{"kind":"distance_measurement","start":{"auth_asym_id":"A","auth_seq_id":64,"label_atom_id":"NE2"},"end":{"auth_asym_id":"A","label_comp_id":"O2","label_atom_id":"O2"},"radius":0.06,"dash_length":0.15,"label_template":"{{distance}}"}}]}]}]}]}]}]}}res-cftr invalid JSON JSON parse error: Extra data: line 1 column 1088 (char 1087)Prompt: show me the CFTR channel
Parser: JSON parse error: Extra data: line 1 column 1088 (char 1087)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/6MSM.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model","model_index":0},"children":[{"kind":"component","params":{"selector":"protein"},"children":[{"kind":"representation","params":{"type":"cartoon","size_factor":1},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"C"}},"children":[{"kind":"representation","params":{"type":"cartoon","size_factor":1.2},"children":[{"kind":"color","params":{"color":"dodgerblue"},"custom":{"molstar_color_theme_name":"chain-id"}}]}],"custom":{"molstar_show_non_covalent_interactions":false}},{"kind":"component","params":{"selector":{"auth_asym_id":"C","beg_auth_seq_id":1,"end_auth_seq_id":1480}},"children":[{"kind":"representation","params":{"type":"backbone","size_factor":1.1},"children":[{"kind":"color","params":{"color":"dodgerblue"}}]}],"custom":{"molstar_show_non_covalent_interactions":false}}]}]}]}]}}]}res-gfp invalid JSON JSON parse error: Extra data: line 1 column 468 (char 467)Prompt: show green fluorescent protein from Aequorea victoria
Parser: JSON parse error: Extra data: line 1 column 468 (char 467)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/2b3p.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model","model_index":0},"children":[{"kind":"component","params":{"selector":{"auth_asym_id":"A"}},"children":[{"kind":"representation","params":{"type":"cartoon","size_factor":1},"children":[{"kind":"color","params":{"color":"lime"}}]}]}]}]}]}]}}}res-lysozyme invalid JSON JSON parse error: Extra data: line 1 column 446 (char 445)Prompt: Show me hen egg white lysozyme
Parser: JSON parse error: Extra data: line 1 column 446 (char 445)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1LYZ.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model","model_index":0},"children":[{"kind":"component","params":{"selector":"protein"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"lightgray"}}]}]}]}]}]}]}}}res-pcsk9 invalid JSON JSON parse error: Extra data: line 1 column 856 (char 855)Prompt: show the structure of PCSK9
Parser: JSON parse error: Extra data: line 1 column 856 (char 855)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/5n74.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model","model_index":0},"children":[{"kind":"component","params":{"selector":"protein"},"children":[{"kind":"representation","params":{"type":"cartoon","size_factor":1},"children":[{"kind":"color","params":{"color":"slategray"}}]}]},{"kind":"component","params":{"selector":"ligand"},"children":[{"kind":"representation","params":{"type":"ball_and_stick","size_factor":0.9},"children":[{"kind":"color","params":{"color":"orange"}}]}]},{"kind":"component","params":{"selector":"ion"},"children":[{"kind":"representation","params":{"type":"spacefill","size_factor":0.6},"children":[{"kind":"color","params":{"color":"gold"}}]}]}]}]}]}]}}]}gen-chain-1lyz invalid MVS Node of kind "component" cannot appear as a child of "component". Allowed parents for "component" are: "structure"Prompt: Load 1LYZ; show everything as a grey cartoon, then colour chain A green.
Mol* validator:
Node of kind "component" cannot appear as a child of "component". Allowed parents for "component" are: "structure"
{
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/1LYZ.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model",
"model_index": 0
},
"children": [
{
"kind": "component",
"params": {
"selector": "polymer"
},
"children": [
{
"kind": "representation",
"params": {
"type": "cartoon"
},
"children": [
{
"kind": "color",
"params": {
"color": "gray"
}
},
{
"kind": "opacity",
"params": {
"opacity": 1
}
}
]
},
{
"kind": "component",
"params": {
"selector": {
"auth_asym_id": "A"
}
},
"children": [
{
"kind": "representation",
"params": {
"type": "cartoon"
},
"children": [
{
"kind": "color",
"params": {
"color": "green"
}
}
]
}
]
}
]
}
]
}
]
}
]
}
]
}
}int-005 invalid MVS Node of kind "component" cannot appear as a child of "component". Allowed parents for "component" are: "structure"Prompt: Show trypsin 3PTB as a grey cartoon and display the interactions between the benzamidine inhibitor and the protein.
Mol* validator:
Node of kind "component" cannot appear as a child of "component". Allowed parents for "component" are: "structure"
{
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/3ptb.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model"
},
"children": [
{
"kind": "component",
"params": {
"selector": "protein"
},
"children": [
{
"kind": "representation",
"params": {
"type": "cartoon"
},
"children": [
{
"kind": "color",
"params": {
"color": "gray"
}
}
]
},
{
"kind": "component",
"params": {
"selector": {
"label_comp_id": "BEN"
}
},
"custom": {
"molstar_show_non_covalent_interactions": true,
"molstar_non_covalent_interactions_radius_ang": 5
}
}
]
}
]
}
]
}
]
}
]
}
}mvs-004 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 632 (char 631)Prompt: Load HIV-1 protease (1HVR); protein as grey cartoon, the bound inhibitor as magenta ball-and-stick, and focus the camera on the inhibitor.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 632 (char 631)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1hvr.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":"ligand"},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"magenta"}}]},{"kind":"focus","params":{}}]}]}}]}]}}mvs-005 invalid JSON JSON parse error: Extra data: line 1 column 468 (char 467)Prompt: Load insulin (4INS) and render the protein as a steel-blue molecular surface.
Parser: JSON parse error: Extra data: line 1 column 468 (char 467)
{"root": {"kind": "root", "children": [{"kind": "download", "params": {"url": "https://files.rcsb.org/download/4INS.cif"}, "children": [{"kind": "parse", "params": {"format": "mmcif"}, "children": [{"kind": "structure", "params": {"type": "model"}, "children": [{"kind": "component", "params": {"selector": "polymer"}, "children": [{"kind": "representation", "params": {"type": "surface"}, "children": [{"kind": "color", "params": {"color": "steelblue"}}]}]}]}]}]}]}}}clinvar-1tup-D281 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 474 (char 473)Prompt: In p53 (PDB 1TUP), chain A, highlight the residue affected by the pathogenic ClinVar variant D281Y as red ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 474 (char 473)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1tup.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":{"auth_asym_id":"A","auth_seq_id":281}},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"red"}}]},{"kind":"focus"}]}]}]}]}}]}}clinvar-1tup-F109 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 663 (char 662)Prompt: In p53 (PDB 1TUP), chain A, highlight the residue affected by the pathogenic ClinVar variant F109V as red ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 663 (char 662)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1tup.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"lightgray"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"A","auth_seq_id":109}},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"red"}}]},{"kind":"focus","params":{}}]}]}}]}]}}clinvar-1tup-S241 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 498 (char 497)Prompt: In p53 (PDB 1TUP), chain A, highlight the residue affected by the pathogenic ClinVar variant S241Y as red ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 498 (char 497)
{"root": {"kind": "root", "children": [{"kind": "download", "params": {"url": "https://files.rcsb.org/download/1tup.cif"}, "children": [{"kind": "parse", "params": {"format": "mmcif"}, "children": [{"kind": "structure", "params": {"type": "model"}, "children": [{"kind": "component", "params": {"selector": {"auth_asym_id": "A", "auth_seq_id": 241}},"children": [{"kind": "representation", "params": {"type": "ball_and_stick"},"children": [{"kind": "color", "params": {"color": "red"}}]}]}]}]}]}]}]}}hotspots-1tup invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 645 (char 644)Prompt: In p53 (PDB 1TUP), chain A, highlight the 6 mutational hotspot residues — the positions carrying the most pathogenic ClinVar variants — as red spheres.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 645 (char 644)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1tup.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":[{"auth_asym_id":"A","auth_seq_id":175},{"auth_asym_id":"A","auth_seq_id":245},{"auth_asym_id":"A","auth_seq_id":248},{"auth_asym_id":"A","auth_seq_id":249},{"auth_asym_id":"A","auth_seq_id":273},{"auth_asym_id":"A","auth_seq_id":282}]},"children":[{"kind":"representation","params":{"type":"spacefill"},"children":[{"kind":"color","params":{"color":"red"}}]}]}]}}]}]}}named-1tup-248 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 458 (char 457)Prompt: In p53 (PDB 1TUP), chain A, select the residue at canonical UniProt position 248 and show it as blue ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 458 (char 457)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1tup.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":{"auth_asym_id":"A","auth_seq_id":248}},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"blue"}}]}]}]}]}]}}]}}gen-cartoon-1cbs invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 424 (char 423)Prompt: Load cellular retinoic-acid binding protein (1CBS) and show the protein as a purple cartoon.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 424 (char 423)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1cbs.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"purple"}}]}]}]}]}]}}]}}gen-cartoon-1hho invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 461 (char 460)Prompt: Load haemoglobin (1HHO) and show the protein as a red cartoon.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 461 (char 460)
{"root": {"kind": "root", "children": [{"kind": "download", "params": {"url": "https://files.rcsb.org/download/1hho.cif"}, "children": [{"kind": "parse", "params": {"format": "mmcif"}, "children": [{"kind": "structure", "params": {"type": "model"}, "children": [{"kind": "component", "params": {"selector": "polymer"}, "children": [{"kind": "representation", "params": {"type": "cartoon"}, "children": [{"kind": "color", "params": {"color": "red"}}]}]}]}]}]}]}]}}gen-cartoon-3ptb invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 424 (char 423)Prompt: Load trypsin (3PTB) and show the protein as a orange cartoon.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 424 (char 423)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/3PTB.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"orange"}}]}]}]}]}]}}]}}gen-cartoon-4ins invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 422 (char 421)Prompt: Load insulin (4INS) and show the protein as a blue cartoon.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 422 (char 421)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/4ins.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"protein"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"blue"}}]}]}]}]}]}}]}}gen-focus-1hho invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 620 (char 619)Prompt: Load 1HHO; grey cartoon protein, magenta ball-and-stick ligands, and focus the camera on the ligand.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 620 (char 619)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1hho.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":"ligand"},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"magenta"}}]},{"kind":"focus"}]}]}}]}]}}gen-focus-2hhb invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 624 (char 623)Prompt: Load 2HHB; grey cartoon protein, magenta ball-and-stick ligands, and focus the camera on the ligand.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 624 (char 623)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/2hhb.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":"ligand"},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"magenta"}}]},{"kind":"focus"}]}]}]}]}}]}}gen-ions-4ins invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 598 (char 597)Prompt: Load 4INS; protein as grey cartoon, and show the ions as purple spheres.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 598 (char 597)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/4ins.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":"ion"},"children":[{"kind":"representation","params":{"type":"spacefill"},"children":[{"kind":"color","params":{"color":"purple"}}]}]}]}]}]}}]}}gen-range-3ptb invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 657 (char 656)Prompt: Load 3PTB; protein as grey cartoon, and show residues 50-110 of chain A as orange ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 657 (char 656)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/3ptb.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"A","beg_auth_seq_id":50,"end_auth_seq_id":110}},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"orange"}}]}]}]}}]}]}}}gen-surface-1hho invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 427 (char 426)Prompt: Load 1HHO; render the protein as a steelblue molecular surface.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 427 (char 426)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1hho.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"surface"},"children":[{"kind":"color","params":{"color":"steelblue"}}]}]}]}]}]}}]}}gen-surface-1lyz invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 423 (char 422)Prompt: Load 1LYZ; render the protein as a khaki molecular surface.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 423 (char 422)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1lyz.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"surface"},"children":[{"kind":"color","params":{"color":"khaki"}}]}]}]}]}]}}]}}gen-surface-2hhb invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 422 (char 421)Prompt: Load 2HHB; render the protein as a salmon molecular surface.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 422 (char 421)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/2hhb.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"surface"},"children":[{"kind":"color","params":{"color":"salmon"}}]}]}]}]}}]}}grd-ligand-4ins-zn invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 595 (char 594)Prompt: Load 4INS; show the protein as a grey cartoon and the ZN as orange ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 595 (char 594)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/4ins.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":"ion"},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"orange"}}]}}]}]}]}]}}int-001 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 1025 (char 1024)Prompt: In oxymyoglobin 1A6M, show the protein as a grey cartoon, His64 and the bound O2 as ball-and-stick, and draw the hydrogen bond from His64 NE2 to the O2 molecule's terminal oxygen (atom O2) as a dashed line labelled with its length.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 1025 (char 1024)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1a6m.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":[{"auth_asym_id":"A","auth_seq_id":64},{"auth_asym_id":"A","label_comp_id":"O2"}]},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"orange"}}]}]},{"kind":"primitives","params":{"color":"yellow","label_color":"yellow"},"children":[{"kind":"primitive","params":{"kind":"distance_measurement","start":{"auth_asym_id":"A","auth_seq_id":64,"label_atom_id":"NE2"},"end":{"auth_asym_id":"A","label_comp_id":"O2","label_atom_id":"O2"},"radius":0.06,"dash_length":0.15,"label_template":"{{distance}}"}}]}]}}]}]}}}int-002 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 1166 (char 1165)Prompt: Load 1A6M with the protein as a grey cartoon. Show the heme and the proximal histidine as ball-and-stick and measure the distance from the heme iron to the histidine's coordinating nitrogen.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 1166 (char 1165)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1a6m.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":"ligand"},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"orange"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"A","auth_seq_id":93}},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"orange"}}]}]},{"kind":"primitives","params":{"color":"yellow","label_color":"yellow"},"children":[{"kind":"primitive","params":{"kind":"distance_measurement","start":{"auth_asym_id":"A","label_comp_id":"HEM","label_atom_id":"FE"},"end":{"auth_asym_id":"A","auth_seq_id":93,"label_atom_id":"NE2"},"radius":0.06,"dash_length":0.15,"label_template":"{{distance}}"}}]}]}}]}}]}}int-003 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 1055 (char 1054)Prompt: In trypsin (3PTB), show the protein as a grey cartoon and the catalytic triad (His57, Asp102, Ser195) as ball-and-stick. Draw the two triad hydrogen bonds as dashed lines with their lengths.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 1055 (char 1054)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/3ptb.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":[{"auth_asym_id":"A","auth_seq_id":57},{"auth_asym_id":"A","auth_seq_id":102},{"auth_asym_id":"A","auth_seq_id":195}]},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"orange"}}]}]},{"kind":"primitives","params":{"color":"yellow","label_color":"yellow"},"children":[{"kind":"primitive","params":{"kind":"distance_measurement","start":{"auth_asym_id":"A","auth_seq_id":57,"label_atom_id":"ND1"},"end":{"auth_asym_id":"A","auth_seq_id":102,"label_atom_id":"OD1"},"radius":0.06,"dash_length":0.15,"label_template":"{{distance}}"}}},{"kind":"primitive","params":{"kind":"distance_measurement","start":{"auth_asym_id":"A","auth_seq_id":57,"label_atom_id":"NE2"},"end":{"auth_asym_id":"A","auth_seq_id":195,"label_atom_id":"OG"},"radius":0.06,"dash_length":0.15,"label_template":"{{distance}}"}}}]}}]}}]}}int-005 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 708 (char 707)Prompt: Show trypsin 3PTB as a grey cartoon and display the interactions between the benzamidine inhibitor and the protein.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 708 (char 707)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/3ptb.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":"ligand"},"custom":{"molstar_show_non_covalent_interactions":true,"molstar_non_covalent_interactions_radius_ang":5},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"orange"}}]}]}]}}]}}]}}res-gfp invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 440 (char 439)Prompt: show green fluorescent protein from Aequorea victoria
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 440 (char 439)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1ema.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"green"}},{"kind":"focus"}]}]}]}]}]}}]}}res-lysozyme invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 463 (char 462)Prompt: Show me hen egg white lysozyme
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 463 (char 462)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1aki.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray","custom":{"molstar_color_theme_name":"chain-id"}}}]}},{"kind":"label","params":{"text":"Hen Egg White Lysozyme"}},{"kind":"focus"}]}]}]}}]}}res-myoglobin invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 444 (char 443)Prompt: Show me sperm whale myoglobin
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 444 (char 443)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1M6C.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"lightgray"}}]},{"kind":"focus"}]}]}]}]}}]}}clinvar-1tup-D281 invalid JSON JSON parse error: Expecting ',' delimiter: line 8 column 69 (char 546)Prompt: In p53 (PDB 1TUP), chain A, highlight the residue affected by the pathogenic ClinVar variant D281Y as red ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 8 column 69 (char 546)
Raw model text was not archived for this run.
clinvar-1tup-F109 invalid JSON JSON parse error: Expecting ',' delimiter: line 8 column 69 (char 546)Prompt: In p53 (PDB 1TUP), chain A, highlight the residue affected by the pathogenic ClinVar variant F109V as red ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 8 column 69 (char 546)
Raw model text was not archived for this run.
clinvar-1tup-S215 invalid JSON JSON parse error: Expecting ',' delimiter: line 10 column 1 (char 553)Prompt: In p53 (PDB 1TUP), chain A, highlight the residue affected by the pathogenic ClinVar variant S215T as red ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 10 column 1 (char 553)
Raw model text was not archived for this run.
named-1tup-143 invalid JSON JSON parse error: Expecting ',' delimiter: line 11 column 14 (char 571)Prompt: In p53 (PDB 1TUP), chain A, select the residue at canonical UniProt position 143 and show it as blue ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 11 column 14 (char 571)
Raw model text was not archived for this run.
named-1tup-248 invalid JSON JSON parse error: Expecting ',' delimiter: line 8 column 70 (char 547)Prompt: In p53 (PDB 1TUP), chain A, select the residue at canonical UniProt position 248 and show it as blue ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 8 column 70 (char 547)
Raw model text was not archived for this run.
gen-chain-1cbs invalid JSON JSON parse error: Expecting ',' delimiter: line 13 column 1 (char 747)Prompt: Load 1CBS; show everything as a grey cartoon, then colour chain A purple.
Parser: JSON parse error: Expecting ',' delimiter: line 13 column 1 (char 747)
Raw model text was not archived for this run.
gen-chain-3ptb invalid JSON JSON parse error: Expecting ',' delimiter: line 13 column 1 (char 747)Prompt: Load 3PTB; show everything as a grey cartoon, then colour chain A orange.
Parser: JSON parse error: Expecting ',' delimiter: line 13 column 1 (char 747)
Raw model text was not archived for this run.
gen-focus-1cbs invalid JSON JSON parse error: Expecting ',' delimiter: line 14 column 14 (char 879)Prompt: Load 1CBS; grey cartoon protein, magenta ball-and-stick ligands, and focus the camera on the ligand.
Parser: JSON parse error: Expecting ',' delimiter: line 14 column 14 (char 879)
Raw model text was not archived for this run.
gen-ions-4ins invalid JSON JSON parse error: Expecting ',' delimiter: line 13 column 1 (char 737)Prompt: Load 4INS; protein as grey cartoon, and show the ions as purple spheres.
Parser: JSON parse error: Expecting ',' delimiter: line 13 column 1 (char 737)
Raw model text was not archived for this run.
gen-range-1cbs invalid JSON JSON parse error: Expecting ',' delimiter: line 13 column 1 (char 806)Prompt: Load 1CBS; protein as grey cartoon, and show residues 20-60 of chain A as orange ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 13 column 1 (char 806)
Raw model text was not archived for this run.
gen-range-3ptb invalid JSON JSON parse error: Expecting ',' delimiter: line 13 column 1 (char 807)Prompt: Load 3PTB; protein as grey cartoon, and show residues 50-110 of chain A as orange ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 13 column 1 (char 807)
Raw model text was not archived for this run.
gen-range-4ins invalid JSON JSON parse error: Expecting ',' delimiter: line 13 column 1 (char 805)Prompt: Load 4INS; protein as grey cartoon, and show residues 5-25 of chain B as orange ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 13 column 1 (char 805)
Raw model text was not archived for this run.
gen-surface-1hho invalid JSON JSON parse error: Expecting ',' delimiter: line 11 column 14 (char 537)Prompt: Load 1HHO; render the protein as a steelblue molecular surface.
Parser: JSON parse error: Expecting ',' delimiter: line 11 column 14 (char 537)
Raw model text was not archived for this run.
gen-surface-4ins invalid JSON JSON parse error: Expecting ',' delimiter: line 12 column 1 (char 535)Prompt: Load 4INS; render the protein as a salmon molecular surface.
Parser: JSON parse error: Expecting ',' delimiter: line 12 column 1 (char 535)
Raw model text was not archived for this run.
grd-disulfide-1lyz invalid JSON JSON parse error: Expecting ',' delimiter: line 13 column 14 (char 790)Prompt: Load 1LYZ; protein as grey cartoon, and highlight the disulfide-bonded cysteines as yellow ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 13 column 14 (char 790)
Raw model text was not archived for this run.
grd-disulfide-3ptb invalid JSON JSON parse error: Expecting ',' delimiter: line 18 column 3 (char 1062)Prompt: Load 3PTB; protein as grey cartoon, and highlight the disulfide-bonded cysteines as yellow ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 18 column 3 (char 1062)
Raw model text was not archived for this run.
grd-disulfide-4ins invalid JSON JSON parse error: Expecting ',' delimiter: line 18 column 1 (char 1055)Prompt: Load 4INS; protein as grey cartoon, and highlight the disulfide-bonded cysteines as yellow ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 18 column 1 (char 1055)
Raw model text was not archived for this run.
grd-ligand-1cbs-rea invalid JSON JSON parse error: Expecting ',' delimiter: line 13 column 1 (char 761)Prompt: Load 1CBS; show the protein as a grey cartoon and the REA as orange ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 13 column 1 (char 761)
Raw model text was not archived for this run.
grd-ligand-2hhb-hem invalid JSON JSON parse error: Expecting ',' delimiter: line 13 column 1 (char 761)Prompt: Load 2HHB; show the protein as a grey cartoon and the HEM as orange ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 13 column 1 (char 761)
Raw model text was not archived for this run.
int-001 invalid JSON JSON parse error: Expecting ',' delimiter: line 22 column 14 (char 1554)Prompt: In oxymyoglobin 1A6M, show the protein as a grey cartoon, His64 and the bound O2 as ball-and-stick, and draw the hydrogen bond from His64 NE2 to the O2 molecule's terminal oxygen (atom O2) as a dashed line labelled with its length.
Parser: JSON parse error: Expecting ',' delimiter: line 22 column 14 (char 1554)
Raw model text was not archived for this run.
int-003 invalid JSON JSON parse error: Expecting ',' delimiter: line 23 column 1 (char 1815)Prompt: In trypsin (3PTB), show the protein as a grey cartoon and the catalytic triad (His57, Asp102, Ser195) as ball-and-stick. Draw the two triad hydrogen bonds as dashed lines with their lengths.
Parser: JSON parse error: Expecting ',' delimiter: line 23 column 1 (char 1815)
Raw model text was not archived for this run.
int-004 invalid JSON JSON parse error: Expecting ',' delimiter: line 12 column 69 (char 870)Prompt: Load 1A6M with the protein as a grey cartoon and show all the non-covalent interactions (hydrogen bonds, metal contacts) around the bound oxygen molecule.
Parser: JSON parse error: Expecting ',' delimiter: line 12 column 69 (char 870)
Raw model text was not archived for this run.
int-005 invalid JSON JSON parse error: Expecting ',' delimiter: line 82 column 73 (char 6898)Prompt: Show trypsin 3PTB as a grey cartoon and display the interactions between the benzamidine inhibitor and the protein.
Parser: JSON parse error: Expecting ',' delimiter: line 82 column 73 (char 6898)
Raw model text was not archived for this run.
res-cftr invalid JSON JSON parse error: Expecting ',' delimiter: line 93 column 93 (char 6647)Prompt: show me the CFTR channel
Parser: JSON parse error: Expecting ',' delimiter: line 93 column 93 (char 6647)
Raw model text was not archived for this run.
res-gfp invalid JSON JSON parse error: Expecting ',' delimiter: line 16 column 1 (char 821)Prompt: show green fluorescent protein from Aequorea victoria
Parser: JSON parse error: Expecting ',' delimiter: line 16 column 1 (char 821)
Raw model text was not archived for this run.
res-lysozyme invalid JSON JSON parse error: Expecting ',' delimiter: line 20 column 1 (char 1350)Prompt: Show me hen egg white lysozyme
Parser: JSON parse error: Expecting ',' delimiter: line 20 column 1 (char 1350)
Raw model text was not archived for this run.
res-pcsk9 invalid JSON JSON parse error: Expecting ',' delimiter: line 23 column 14 (char 1110)Prompt: show the structure of PCSK9
Parser: JSON parse error: Expecting ',' delimiter: line 23 column 14 (char 1110)
Raw model text was not archived for this run.
res-pde5a invalid JSON JSON parse error: Expecting ',' delimiter: line 22 column 1 (char 1352)Prompt: I wanna see a structure of PDE5A
Parser: JSON parse error: Expecting ',' delimiter: line 22 column 1 (char 1352)
Raw model text was not archived for this run.
mvs-004 invalid MVS Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_sourcePrompt: Load HIV-1 protease (1HVR); protein as grey cartoon, the bound inhibitor as magenta ball-and-stick, and focus the camera on the inhibitor.
Mol* validator:
Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_source", "primitives", "primitives_from_uri", "volume", "volume_representation"
{
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/1hvr.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model"
},
"children": [
{
"kind": "component",
"params": {
"selector": "protein"
},
"children": [
{
"kind": "representation",
"params": {
"type": "cartoon"
},
"children": [
{
"kind": "color",
"params": {
"color": "gray"
}
}
]
}
]
},
{
"kind": "component",
"params": {
"selector": {
"auth_asym_id": "A",
"label_comp_id": "M25",
"auth_seq_id": 1
}
},
"children": [
{
"kind": "representation",
"params": {
"type": "ball_and_stick"
},
"children": [
{
"kind": "color",
"params": {
"color": "magenta"
}
}
]
}
]
},
{
"kind": "focus",
"params": {
"radius": 1.5
},
"children": [
{
"kind": "component",
"params": {
"selector": {
"auth_asym_id": "A",
"label_comp_id": "M25",
"auth_seq_id": 1
}
}
}
]
}
]
}
]
}
]
}
]
}
}hotspots-1tup invalid MVS Invalid parameters for node of kind "component": Invalid value for parameter "selector":Prompt: In p53 (PDB 1TUP), chain A, highlight the 6 mutational hotspot residues — the positions carrying the most pathogenic ClinVar variants — as red spheres.
Mol* validator:
Invalid parameters for node of kind "component":
Invalid value for parameter "selector":
"[object Object]" is not a valid value for literal type ("all" | "polymer" | "protein" | "nucleic" | "branched" | "ligand" | "ion" | "water" | "coarse")
Invalid value [135,143,155,175,245,248] supplied to : (("all" | "polymer" | "protein" | "nucleic" | "branched" | "ligand" | "ion" | "water" | "coarse") | { label_entity_id?: string, label_asym_id?: string, auth_asym_id?: string, label_seq_id?: Integer, auth_seq_id?: Integer, pdbx_PDB_ins_code?: string, beg_label_seq_id?: Integer, end_label_seq_id?: Integer, beg_auth_seq_id?: Integer, end_auth_seq_id?: Integer, label_comp_id?: string, auth_comp_id?: string, residue_index?: Integer, label_atom_id?: string, auth_atom_id?: string, type_symbol?: string, atom_id?: Integer, atom_index?: Integer, instance_id?: string } | Array<{ label_entity_id?: string, label_asym_id?: string, auth_asym_id?: string, label_seq_id?: Integer, auth_seq_id?: Integer, pdbx_PDB_ins_code?: string, beg_label_seq_id?: Integer, end_label_seq_id?: Integer, beg_auth_seq_id?: Integer, end_auth_seq_id?: Integer, label_comp_id?: string, auth_comp_id?: string, residue_index?: Integer, label_atom_id?: string, auth_atom_id?: string, type_symbol?: string, atom_id?: Integer, atom_index?: Integer, instance_id?: string }>)/1: { label_entity_id?: string, label_asym_id?: string, auth_asym_id?: string, label_seq_id?: Integer, auth_seq_id?: Integer, pdbx_PDB_ins_code?: string, beg_label_seq_id?: Integer, end_label_seq_id?: Integer, beg_auth_seq_id?: Integer, end_auth_seq_id?: Integer, label_comp_id?: string, auth_comp_id?: string, residue_index?: Integer, label_atom_id?: string, auth_atom_id?: string, type_symbol?: string, atom_id?: Integer, atom_index?: Integer, instance_id?: string }/auth_seq_id: Integer
Invalid value {"auth_asym_id":"A","auth_seq_id":[135,143,155,175,245,248]} supplied to : (("all" | "polymer" | "protein" | "nucleic" | "branched" | "ligand" | "ion" | "water" | "coarse") | { label_entity_id?: string, label_asym_id?: string, auth_asym_id?: string, label_seq_id?: Integer, auth_seq_id?: Integer, pdbx_PDB_ins_code?: string, beg_label_seq_id?: Integer, end_label_seq_id?: Integer, beg_auth_seq_id?: Integer, end_auth_seq_id?: Integer, label_comp_id?: string, auth_comp_id?: string, residue_index?: Integer, label_atom_id?: string, auth_atom_id?: string, type_symbol?: string, atom_id?: Integer, atom_index?: Integer, instance_id?: string } | Array<{ label_entity_id?: string, label_asym_id?: string, auth_asym_id?: string, label_seq_id?: Integer, auth_seq_id?: Integer, pdbx_PDB_ins_code?: string, beg_label_seq_id?: Integer, end_label_seq_id?: Integer, beg_auth_seq_id?: Integer, end_auth_seq_id?: Integer, label_comp_id?: string, auth_comp_id?: string, residue_index?: Integer, label_atom_id?: string, auth_atom_id?: string, type_symbol?: string, atom_id?: Integer, atom_index?: Integer, instance_id?: string }>)/2: Array<{ label_entity_id?: string, label_asym_id?: string, auth_asym_id?: string, label_seq_id?: Integer, auth_seq_id?: Integer, pdbx_PDB_ins_code?: string, beg_label_seq_id?: Integer, end_label_seq_id?: Integer, beg_auth_seq_id?: Integer, end_auth_seq_id?: Integer, label_comp_id?: string, auth_comp_id?: string, residue_index?: Integer, label_atom_id?: string, auth_atom_id?: string, type_symbol?: string, atom_id?: Integer, atom_index?: Integer, instance_id?: string }>{
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/1tup.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model"
},
"children": [
{
"kind": "component",
"params": {
"selector": {
"auth_asym_id": "A",
"auth_seq_id": [
135,
143,
155,
175,
245,
248
]
}
},
"children": [
{
"kind": "representation",
"params": {
"type": "spacefill",
"size_factor": 1.0
},
"children": [
{
"kind": "color",
"params": {
"color": "red"
}
}
]
}
]
}
]
}
]
}
]
}
]
}
}res-myoglobin invalid MVS Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_sourcePrompt: Show me sperm whale myoglobin
Mol* validator:
Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_source", "primitives", "primitives_from_uri", "volume", "volume_representation"
{
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/1MBO.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model"
},
"children": [
{
"kind": "component",
"params": {
"selector": "protein"
},
"children": [
{
"kind": "representation",
"params": {
"type": "cartoon"
},
"children": [
{
"kind": "color",
"params": {
"color": "steelblue"
}
}
]
}
]
},
{
"kind": "component",
"params": {
"selector": {
"auth_asym_id": "A",
"auth_seq_id": 85
}
},
"children": [
{
"kind": "representation",
"params": {
"type": "ball_and_stick",
"size_factor": 1.5
},
"children": [
{
"kind": "color",
"params": {
"color": "orange"
}
}
]
}
]
},
{
"kind": "component",
"params": {
"selector": {
"auth_asym_id": "A",
"label_comp_id": "HEM"
}
},
"children": [
{
"kind": "representation",
"params": {
"type": "ball_and_stick",
"size_factor": 1.2
},
"children": [
{
"kind": "color",
"params": {
"color": "red"
}
}
]
}
]
},
{
"kind": "component",
"params": {
"selector": "water"
},
"children": [
{
"kind": "representation",
"params": {
"type": "ball_and_stick",
"size_factor": 0.3
},
"children": [
{
"kind": "color",
"params": {
"color": "lightblue"
}
}
]
}
]
},
{
"kind": "focus",
"params": {
"radius": 5
}
}
]
}
]
}
]
}
]
}
}mvs-001 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 422 (char 421)Prompt: Load haemoglobin (PDB 1HHO) and show the protein as a grey cartoon.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 422 (char 421)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1hho.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]}]}]}]}}mvs-003 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 668 (char 667)Prompt: Load hen egg-white lysozyme (1LYZ) as a grey cartoon, and show the two catalytic residues Glu35 and Asp52 on chain A as red ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 668 (char 667)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1lyz.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"grey"}}]}]},{"kind":"component","params":{"selector":[{"auth_asym_id":"A","auth_seq_id":35},{"auth_asym_id":"A","auth_seq_id":52}]},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"red"}}]}]}]}}]}]}}mvs-004 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 624 (char 623)Prompt: Load HIV-1 protease (1HVR); protein as grey cartoon, the bound inhibitor as magenta ball-and-stick, and focus the camera on the inhibitor.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 624 (char 623)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1hvr.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":"ligand"},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"magenta"}}]},{"kind":"focus"}]}]}]}]}}clinvar-1tup-F109 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 633 (char 632)Prompt: In p53 (PDB 1TUP), chain A, highlight the residue affected by the pathogenic ClinVar variant F109V as red ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 633 (char 632)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1tup.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"A","auth_seq_id":109}},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"red"}}]}]}]}]}]}}clinvar-1tup-N239 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 633 (char 632)Prompt: In p53 (PDB 1TUP), chain A, highlight the residue affected by the pathogenic ClinVar variant N239T as red ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 633 (char 632)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1tup.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"A","auth_seq_id":239}},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"red"}}]}]}]}]}]}}clinvar-1tup-S215 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 711 (char 710)Prompt: In p53 (PDB 1TUP), chain A, highlight the residue affected by the pathogenic ClinVar variant S215T as red ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 711 (char 710)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1tup.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":{"auth_asym_id":"A"}},"children":[{"kind":"representation","params":{"type":"cartoon","size_factor":1},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"A","auth_seq_id":215}},"children":[{"kind":"representation","params":{"type":"ball_and_stick","size_factor":1},"children":[{"kind":"color","params":{"color":"red"}}]},{"kind":"focus","params":{"radius":5}}]}]}}]}]}}clinvar-1tup-S241 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 681 (char 680)Prompt: In p53 (PDB 1TUP), chain A, highlight the residue affected by the pathogenic ClinVar variant S241Y as red ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 681 (char 680)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1tup.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"}, "children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon","size_factor":1.0},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"A","auth_seq_id":241}},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"red"}}]},{"kind":"focus","params":{}}]}]}]}]}}hotspots-1tup invalid JSON no JSON object found in outputPrompt: In p53 (PDB 1TUP), chain A, highlight the 6 mutational hotspot residues — the positions carrying the most pathogenic ClinVar variants — as red spheres.
Parser: no JSON object found in output
The model returned an empty response.
named-1tup-143 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 458 (char 457)Prompt: In p53 (PDB 1TUP), chain A, select the residue at canonical UniProt position 143 and show it as blue ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 458 (char 457)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1tup.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":{"auth_asym_id":"A","auth_seq_id":143}},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"blue"}}]}]}]}]}]}}gen-cartoon-1lyz invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 423 (char 422)Prompt: Load lysozyme (1LYZ) and show the protein as a green cartoon.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 423 (char 422)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1lyz.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"green"}}]}]}]}]}]}}gen-chain-1hho invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 604 (char 603)Prompt: Load 1HHO; show everything as a grey cartoon, then colour chain A red.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 604 (char 603)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1hho.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"A"}},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"red"}}]}]}]}}]}]}}gen-chain-1lyz invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 610 (char 609)Prompt: Load 1LYZ; show everything as a grey cartoon, then colour chain A green.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 610 (char 609)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1lyz.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"A"}},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"green"}}]}]}]}]}]}}gen-chain-2hhb invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 609 (char 608)Prompt: Load 2HHB; show everything as a grey cartoon, then colour chain B teal.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 609 (char 608)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/2hhb.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"B"}},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"teal"}}]}]}]}]}]}}gen-chain-3ptb invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 611 (char 610)Prompt: Load 3PTB; show everything as a grey cartoon, then colour chain A orange.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 611 (char 610)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/3ptb.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"A"}},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"orange"}}]}]}]}]}]}}gen-chain-4ins invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 609 (char 608)Prompt: Load 4INS; show everything as a grey cartoon, then colour chain B blue.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 609 (char 608)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/4ins.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"B"}},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"blue"}}]}]}]}]}]}}gen-focus-1cbs invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 647 (char 646)Prompt: Load 1CBS; grey cartoon protein, magenta ball-and-stick ligands, and focus the camera on the ligand.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 647 (char 646)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1cbs.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":"ligand"},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"magenta"}}]},{"kind":"focus","params":{"radius":10}}]}]}]}]}}gen-focus-1hho invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 672 (char 671)Prompt: Load 1HHO; grey cartoon protein, magenta ball-and-stick ligands, and focus the camera on the ligand.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 672 (char 671)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1hho.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model","model_index":0},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon","size_factor":1},"children":[{"kind":"color","params":{"color":"grey"}}]}]},{"kind":"component","params":{"selector":"ligand"},"children":[{"kind":"representation","params":{"type":"ball_and_stick","size_factor":1},"children":[{"kind":"color","params":{"color":"magenta"}}]},{"kind":"focus"}]}]}]}]}}gen-focus-2hhb invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 654 (char 653)Prompt: Load 2HHB; grey cartoon protein, magenta ball-and-stick ligands, and focus the camera on the ligand.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 654 (char 653)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/2hhb.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model","model_index":0},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":"ligand"},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"magenta"}}]},{"kind":"focus","params":{}}]}]}]}]}]}gen-focus-3ptb invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 624 (char 623)Prompt: Load 3PTB; grey cartoon protein, magenta ball-and-stick ligands, and focus the camera on the ligand.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 624 (char 623)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/3ptb.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":"ligand"},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"magenta"}}]},{"kind":"focus"}]}]}]}]}}gen-ions-2hhb invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 598 (char 597)Prompt: Load 2HHB; protein as grey cartoon, and show the ions as purple spheres.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 598 (char 597)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/2hhb.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":"ion"},"children":[{"kind":"representation","params":{"type":"spacefill"},"children":[{"kind":"color","params":{"color":"purple"}}]}]}]}]}]}}gen-ions-3ptb invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 598 (char 597)Prompt: Load 3PTB; protein as grey cartoon, and show the ions as purple spheres.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 598 (char 597)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/3ptb.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"protein"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":"ion"},"children":[{"kind":"representation","params":{"type":"spacefill"},"children":[{"kind":"color","params":{"color":"purple"}}]}]}]}]}]}}gen-ions-4ins invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 598 (char 597)Prompt: Load 4INS; protein as grey cartoon, and show the ions as purple spheres.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 598 (char 597)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/4ins.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"protein"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":"ion"},"children":[{"kind":"representation","params":{"type":"spacefill"},"children":[{"kind":"color","params":{"color":"purple"}}]}]}]}]}]}}gen-ligands-1cbs invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 606 (char 605)Prompt: Load 1CBS; show the protein as a grey cartoon and the ligands as purple ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 606 (char 605)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1CBS.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":"ligand"},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"purple"}}]}]}]}]}]}}gen-ligands-1hho invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 603 (char 602)Prompt: Load 1HHO; show the protein as a grey cartoon and the ligands as red ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 603 (char 602)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1hho.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":"ligand"},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"red"}}]}]}]}]}]}}gen-ligands-3ptb invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 606 (char 605)Prompt: Load 3PTB; show the protein as a grey cartoon and the ligands as orange ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 606 (char 605)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/3ptb.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":"ligand"},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"orange"}}]}]}]}]}]}}gen-range-1cbs invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 660 (char 659)Prompt: Load 1CBS; protein as grey cartoon, and show residues 20-60 of chain A as orange ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 660 (char 659)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1CBS.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"protein"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"A","beg_auth_seq_id":20,"end_auth_seq_id":60}},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"orange"}}]}]}]}]}]}}gen-range-1hho invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 660 (char 659)Prompt: Load 1HHO; protein as grey cartoon, and show residues 30-90 of chain A as orange ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 660 (char 659)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1hho.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"A","beg_auth_seq_id":30,"end_auth_seq_id":90}},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"orange"}}]}]}]}]}]}}gen-range-1lyz invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 660 (char 659)Prompt: Load 1LYZ; protein as grey cartoon, and show residues 40-80 of chain A as orange ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 660 (char 659)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1lyz.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"protein"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"A","beg_auth_seq_id":40,"end_auth_seq_id":80}},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"orange"}}]}]}]}]}]}}gen-range-2hhb invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 660 (char 659)Prompt: Load 2HHB; protein as grey cartoon, and show residues 10-70 of chain B as orange ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 660 (char 659)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/2hhb.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"B","beg_auth_seq_id":10,"end_auth_seq_id":70}},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"orange"}}]}]}]}]}]}}gen-range-3ptb invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 661 (char 660)Prompt: Load 3PTB; protein as grey cartoon, and show residues 50-110 of chain A as orange ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 661 (char 660)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/3ptb.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"A","beg_auth_seq_id":50,"end_auth_seq_id":110}},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"orange"}}]}]}]}]}]}}gen-surface-1cbs invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 427 (char 426)Prompt: Load 1CBS; render the protein as a steelblue molecular surface.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 427 (char 426)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1cbs.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"surface"},"children":[{"kind":"color","params":{"color":"steelblue"}}]}]}]}]}]}}gen-surface-1lyz invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 423 (char 422)Prompt: Load 1LYZ; render the protein as a khaki molecular surface.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 423 (char 422)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1lyz.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"protein"},"children":[{"kind":"representation","params":{"type":"surface"},"children":[{"kind":"color","params":{"color":"khaki"}}]}]}]}]}]}}gen-surface-2hhb invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 424 (char 423)Prompt: Load 2HHB; render the protein as a salmon molecular surface.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 424 (char 423)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/2hhb.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"protein"},"children":[{"kind":"representation","params":{"type":"surface"},"children":[{"kind":"color","params":{"color":"salmon"}}]}]}]}]}]}}gen-surface-4ins invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 424 (char 423)Prompt: Load 4INS; render the protein as a salmon molecular surface.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 424 (char 423)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/4ins.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"protein"},"children":[{"kind":"representation","params":{"type":"surface"},"children":[{"kind":"color","params":{"color":"salmon"}}]}]}]}]}]}}grd-disulfide-1lyz invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 655 (char 654)Prompt: Load 1LYZ; protein as grey cartoon, and highlight the disulfide-bonded cysteines as yellow ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 655 (char 654)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1lyz.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model","model_index":0},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"A","auth_comp_id":"CYS"}},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"yellow"}}]}]}]}]}]}}grd-disulfide-3ptb invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 618 (char 617)Prompt: Load 3PTB; protein as grey cartoon, and highlight the disulfide-bonded cysteines as yellow ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 618 (char 617)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/3ptb.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"label_comp_id":"CYS"}},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"yellow"}}]}]}]}]]}}grd-disulfide-4ins invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 1485 (char 1484)Prompt: Load 4INS; protein as grey cartoon, and highlight the disulfide-bonded cysteines as yellow ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 1485 (char 1484)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/4ins.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"A","auth_seq_id":7}},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"yellow"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"A","auth_seq_id":11}},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"yellow"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"A","auth_seq_id":20}},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"yellow"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"B","auth_seq_id":7}},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"yellow"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"B","auth_seq_id":19}},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"yellow"}}]}]}]}]}]}}grd-ligand-1cbs-rea invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 619 (char 618)Prompt: Load 1CBS; show the protein as a grey cartoon and the REA as orange ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 619 (char 618)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1cbs.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"protein"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_comp_id":"REA"}},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"orange"}}]}]}]}]}]]}}grd-ligand-1hho-hem invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 608 (char 607)Prompt: Load 1HHO; show the protein as a grey cartoon and the HEM as orange ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 608 (char 607)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1hho.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":"ligand"},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"orange"}}]}]}]}]}]}]}grd-ligand-2hhb-hem invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 622 (char 621)Prompt: Load 2HHB; show the protein as a grey cartoon and the HEM as orange ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 622 (char 621)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/2hhb.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_comp_id":"HEM"}},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"orange"}}]}]}]}]}]}]}grd-ligand-3ptb-ca invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 619 (char 618)Prompt: Load 3PTB; show the protein as a grey cartoon and the CA as orange ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 619 (char 618)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/3ptb.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_atom_id":"CA"}},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"orange"}}]}]}]}]}]}}grd-ligand-4ins-zn invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 619 (char 618)Prompt: Load 4INS; show the protein as a grey cartoon and the ZN as orange ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 619 (char 618)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/4ins.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_comp_id":"ZN"}},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"orange"}}]}]}]}]}]}}int-001 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 1035 (char 1034)Prompt: In oxymyoglobin 1A6M, show the protein as a grey cartoon, His64 and the bound O2 as ball-and-stick, and draw the hydrogen bond from His64 NE2 to the O2 molecule's terminal oxygen (atom O2) as a dashed line labelled with its length.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 1035 (char 1034)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1a6m.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"A","auth_seq_id":64}},"children":[{"kind":"representation","params":{"type":"ball_and_stick"}}]},{"kind":"component","params":{"selector":"ligand"},"children":[{"kind":"representation","params":{"type":"ball_and_stick"}}]},{"kind":"primitives","params":{"color":"yellow","label_color":"yellow"},"children":[{"kind":"primitive","params":{"kind":"distance_measurement","start":{"auth_asym_id":"A","auth_seq_id":64,"label_atom_id":"NE2"},"end":{"label_comp_id":"OXY","label_atom_id":"O2"},"radius":0.06,"dash_length":0.15,"label_template":"{{distance}}"}}]}]}]}]}}int-002 invalid JSON no JSON object found in outputPrompt: Load 1A6M with the protein as a grey cartoon. Show the heme and the proximal histidine as ball-and-stick and measure the distance from the heme iron to the histidine's coordinating nitrogen.
Parser: no JSON object found in output
The model returned an empty response.
int-003 invalid JSON no JSON object found in outputPrompt: In trypsin (3PTB), show the protein as a grey cartoon and the catalytic triad (His57, Asp102, Ser195) as ball-and-stick. Draw the two triad hydrogen bonds as dashed lines with their lengths.
Parser: no JSON object found in output
The model returned an empty response.
int-004 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 744 (char 743)Prompt: Load 1A6M with the protein as a grey cartoon and show all the non-covalent interactions (hydrogen bonds, metal contacts) around the bound oxygen molecule.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 744 (char 743)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1a6m.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"protein"},"children":[{"kind":"representation","params":{"type":"cartoon","size_factor":1},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":"ligand","custom":{"molstar_show_non_covalent_interactions":true,"molstar_non_covalent_interactions_radius_ang":5}},"children":[{"kind":"representation","params":{"type":"ball_and_stick","size_factor":1},"children":[{"kind":"color","params":{"color":"orange"}}]}]}]}]}]}}int-005 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 648 (char 647)Prompt: Show trypsin 3PTB as a grey cartoon and display the interactions between the benzamidine inhibitor and the protein.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 648 (char 647)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/3ptb.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":[{"auth_asym_id":"A"},{"auth_comp_id":"BZD"}]},"children":[{"kind":"custom","params":{"molstar_show_non_covalent_interactions":true,"molstar_non_covalent_interactions_radius_ang":5}}]}]}]}]}}res-cftr invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 422 (char 421)Prompt: show me the CFTR channel
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 422 (char 421)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/6MSM.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]}]}]}]}}res-myoglobin invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 606 (char 605)Prompt: Show me sperm whale myoglobin
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 606 (char 605)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1a6m.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":"ligand"},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"orange"}}]}]}]}]}]}}res-pcsk9 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 422 (char 421)Prompt: show the structure of PCSK9
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 422 (char 421)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/4k7a.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]}]}]}]}}mvs-001 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 462 (char 461)Prompt: Load haemoglobin (PDB 1HHO) and show the protein as a grey cartoon.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 462 (char 461)
{"root": {"kind": "root", "children": [{"kind": "download", "params": {"url": "https://files.rcsb.org/download/1hho.cif"}, "children": [{"kind": "parse", "params": {"format": "mmcif"}, "children": [{"kind": "structure", "params": {"type": "model"}, "children": [{"kind": "component", "params": {"selector": "protein"}, "children": [{"kind": "representation", "params": {"type": "cartoon"}, "children": [{"kind": "color", "params": {"color": "gray"}}]}]}]}]}]}]}]}mvs-002 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 663 (char 662)Prompt: Load haemoglobin (1HHO); show the protein as a grey cartoon and the heme groups as orange ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 663 (char 662)
{"root": {"kind": "root", "children": [{"kind": "download", "params": {"url": "https://files.rcsb.org/download/1hho.cif"}, "children": [{"kind": "parse", "params": {"format": "mmcif"}, "children": [{"kind": "structure", "params": {"type": "model"}, "children": [{"kind": "component", "params": {"selector": "polymer"}, "children": [{"kind": "representation", "params": {"type": "cartoon"}, "children": [{"kind": "color", "params": {"color": "gray"}}]}]}, {"kind": "component", "params": {"selector": "ligand"}, "children": [{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [{"kind": "color", "params": {"color": "orange"}}]}]}]}]}]}]}]}mvs-003 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 844 (char 843)Prompt: Load hen egg-white lysozyme (1LYZ) as a grey cartoon, and show the two catalytic residues Glu35 and Asp52 on chain A as red ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 844 (char 843)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1lyz.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"protein"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"A","auth_seq_id":35}},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"red"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"A","auth_seq_id":52}},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"red"}}]}]}]}]}]}]}]}}mvs-004 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 638 (char 637)Prompt: Load HIV-1 protease (1HVR); protein as grey cartoon, the bound inhibitor as magenta ball-and-stick, and focus the camera on the inhibitor.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 638 (char 637)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1hvr.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":"ligand"},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"magenta"}}]},{"kind":"focus","params":{}}]}]}]}]}]}]}mvs-005 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 467 (char 466)Prompt: Load insulin (4INS) and render the protein as a steel-blue molecular surface.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 467 (char 466)
{"root": {"kind": "root", "children": [{"kind": "download", "params": {"url": "https://files.rcsb.org/download/4ins.cif"}, "children": [{"kind": "parse", "params": {"format": "mmcif"}, "children": [{"kind": "structure", "params": {"type": "model"}, "children": [{"kind": "component", "params": {"selector": "polymer"}, "children": [{"kind": "representation", "params": {"type": "surface"}, "children": [{"kind": "color", "params": {"color": "steelblue"}}]}]}]}]}]}]}]}clinvar-1tup-D281 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 459 (char 458)Prompt: In p53 (PDB 1TUP), chain A, highlight the residue affected by the pathogenic ClinVar variant D281Y as red ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 459 (char 458)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1tup.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":{"auth_asym_id":"A","auth_seq_id":281}},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"red"}}]}]}]}]}]}]}]}clinvar-1tup-F109 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 459 (char 458)Prompt: In p53 (PDB 1TUP), chain A, highlight the residue affected by the pathogenic ClinVar variant F109V as red ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 459 (char 458)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1tup.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":{"auth_asym_id":"A","auth_seq_id":109}},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"red"}}]}]}]}]}]}]}]}clinvar-1tup-N239 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 636 (char 635)Prompt: In p53 (PDB 1TUP), chain A, highlight the residue affected by the pathogenic ClinVar variant N239T as red ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 636 (char 635)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1tup.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"protein"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"A","auth_seq_id":239}}, "children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"red"}}]}]}]}]}]}]}]}"}clinvar-1tup-S215 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 460 (char 459)Prompt: In p53 (PDB 1TUP), chain A, highlight the residue affected by the pathogenic ClinVar variant S215T as red ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 460 (char 459)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1tup.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":{"auth_asym_id":"A","auth_seq_id":215}}, "children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"red"}}]}]}]}]}]}]}]}}clinvar-1tup-S241 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 500 (char 499)Prompt: In p53 (PDB 1TUP), chain A, highlight the residue affected by the pathogenic ClinVar variant S241Y as red ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 500 (char 499)
{"root": {"kind": "root", "children": [{"kind": "download", "params": {"url": "https://files.rcsb.org/download/1tup.cif"}, "children": [{"kind": "parse", "params": {"format": "mmcif"}, "children": [{"kind": "structure", "params": {"type": "model"}, "children": [{"kind": "component", "params": {"selector": {"auth_asym_id": "A", "auth_seq_id": 241}}, "children": [{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [{"kind": "color", "params": {"color": "red"}}]}]}]}]}]}]}]}]}}named-1tup-143 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 501 (char 500)Prompt: In p53 (PDB 1TUP), chain A, select the residue at canonical UniProt position 143 and show it as blue ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 501 (char 500)
{"root": {"kind": "root", "children": [{"kind": "download", "params": {"url": "https://files.rcsb.org/download/1tup.cif"}, "children": [{"kind": "parse", "params": {"format": "mmcif"}, "children": [{"kind": "structure", "params": {"type": "model"}, "children": [{"kind": "component", "params": {"selector": {"auth_asym_id": "A", "auth_seq_id": 143}}, "children": [{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [{"kind": "color", "params": {"color": "blue"}}]}]}]}]}]}]}]}named-1tup-175 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 501 (char 500)Prompt: In p53 (PDB 1TUP), chain A, select the residue at canonical UniProt position 175 and show it as blue ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 501 (char 500)
{"root": {"kind": "root", "children": [{"kind": "download", "params": {"url": "https://files.rcsb.org/download/1tup.cif"}, "children": [{"kind": "parse", "params": {"format": "mmcif"}, "children": [{"kind": "structure", "params": {"type": "model"}, "children": [{"kind": "component", "params": {"selector": {"auth_asym_id": "A", "auth_seq_id": 175}}, "children": [{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [{"kind": "color", "params": {"color": "blue"}}]}]}]}]}]}]}]}named-1tup-248 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 460 (char 459)Prompt: In p53 (PDB 1TUP), chain A, select the residue at canonical UniProt position 248 and show it as blue ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 460 (char 459)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1tup.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":{"auth_asym_id":"A","auth_seq_id":248}},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"blue"}}]}]}]}]}]}]}]}gen-cartoon-1cbs invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 426 (char 425)Prompt: Load cellular retinoic-acid binding protein (1CBS) and show the protein as a purple cartoon.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 426 (char 425)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1cbs.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"protein"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"purple"}}]}]}]}]}]}]}]}gen-cartoon-1hho invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 461 (char 460)Prompt: Load haemoglobin (1HHO) and show the protein as a red cartoon.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 461 (char 460)
{"root": {"kind": "root", "children": [{"kind": "download", "params": {"url": "https://files.rcsb.org/download/1hho.cif"}, "children": [{"kind": "parse", "params": {"format": "mmcif"}, "children": [{"kind": "structure", "params": {"type": "model"}, "children": [{"kind": "component", "params": {"selector": "polymer"}, "children": [{"kind": "representation", "params": {"type": "cartoon"}, "children": [{"kind": "color", "params": {"color": "red"}}]}]}]}]}]}]}]}"}gen-cartoon-1lyz invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 463 (char 462)Prompt: Load lysozyme (1LYZ) and show the protein as a green cartoon.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 463 (char 462)
{"root": {"kind": "root", "children": [{"kind": "download", "params": {"url": "https://files.rcsb.org/download/1lyz.cif"}, "children": [{"kind": "parse", "params": {"format": "mmcif"}, "children": [{"kind": "structure", "params": {"type": "model"}, "children": [{"kind": "component", "params": {"selector": "polymer"}, "children": [{"kind": "representation", "params": {"type": "cartoon"}, "children": [{"kind": "color", "params": {"color": "green"}}]}]}]}]}]}]}]}gen-cartoon-2hhb invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 424 (char 423)Prompt: Load deoxyhaemoglobin (2HHB) and show the protein as a teal cartoon.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 424 (char 423)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/2hhb.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"protein"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"teal"}}]}]}]}]}]}]}]}gen-cartoon-3ptb invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 464 (char 463)Prompt: Load trypsin (3PTB) and show the protein as a orange cartoon.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 464 (char 463)
{"root": {"kind": "root", "children": [{"kind": "download", "params": {"url": "https://files.rcsb.org/download/3ptb.cif"}, "children": [{"kind": "parse", "params": {"format": "mmcif"}, "children": [{"kind": "structure", "params": {"type": "model"}, "children": [{"kind": "component", "params": {"selector": "protein"}, "children": [{"kind": "representation", "params": {"type": "cartoon"}, "children": [{"kind": "color", "params": {"color": "orange"}}]}]}]}]}]}]}]}gen-cartoon-4ins invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 424 (char 423)Prompt: Load insulin (4INS) and show the protein as a blue cartoon.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 424 (char 423)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/4ins.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"protein"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"blue"}}]}]}]}]}]}]}]}gen-chain-1cbs invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 497 (char 496)Prompt: Load 1CBS; show everything as a grey cartoon, then colour chain A purple.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 497 (char 496)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1cbs.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"all"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}},{"kind":"color","params":{"color":"purple"},"selector":{"auth_asym_id":"A"}}]}]}]}]}]}]}]}]}}gen-chain-1hho invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 611 (char 610)Prompt: Load 1HHO; show everything as a grey cartoon, then colour chain A red.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 611 (char 610)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1hho.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"A"}}, "children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"red"}}]}]}]}]}]}]}]}]}gen-chain-1lyz invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 608 (char 607)Prompt: Load 1LYZ; show everything as a grey cartoon, then colour chain A green.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 608 (char 607)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1lyz.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"all"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"A"}},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"green"}}]}]}]}]}]}]}]}}gen-chain-3ptb invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 614 (char 613)Prompt: Load 3PTB; show everything as a grey cartoon, then colour chain A orange.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 614 (char 613)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/3ptb.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"protein"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"A"}}, "children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"orange"}}]}]}]}]}]}]}]}"}gen-chain-4ins invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 612 (char 611)Prompt: Load 4INS; show everything as a grey cartoon, then colour chain B blue.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 612 (char 611)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/4ins.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"B"}}, "children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"blue"}}]}]}]}]}]}]}]}gen-focus-1cbs invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 638 (char 637)Prompt: Load 1CBS; grey cartoon protein, magenta ball-and-stick ligands, and focus the camera on the ligand.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 638 (char 637)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1cbs.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":"ligand"},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"magenta"}}]},{"kind":"focus","params":{}}]}]}]}]}]}]}]}gen-focus-1hho invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 638 (char 637)Prompt: Load 1HHO; grey cartoon protein, magenta ball-and-stick ligands, and focus the camera on the ligand.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 638 (char 637)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1hho.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"protein"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":"ligand"},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"magenta"}}]},{"kind":"focus","params":{}}]}]}]}]}]}]}gen-focus-2hhb invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 648 (char 647)Prompt: Load 2HHB; grey cartoon protein, magenta ball-and-stick ligands, and focus the camera on the ligand.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 648 (char 647)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/2hhb.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"protein"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":"ligand"},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"magenta"}}]},{"kind":"focus","params":{"radius":5}}]}]}]}]}]}]}]}}gen-focus-3ptb invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 638 (char 637)Prompt: Load 3PTB; grey cartoon protein, magenta ball-and-stick ligands, and focus the camera on the ligand.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 638 (char 637)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/3ptb.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"protein"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"grey"}}]}]},{"kind":"component","params":{"selector":"ligand"},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"magenta"}}]},{"kind":"focus","params":{}}]}]}]}]}]}]}]}]}}gen-ions-1hho invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 600 (char 599)Prompt: Load 1HHO; protein as grey cartoon, and show the ions as purple spheres.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 600 (char 599)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1hho.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"protein"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":"ion"},"children":[{"kind":"representation","params":{"type":"spacefill"},"children":[{"kind":"color","params":{"color":"purple"}}]}]}]}]}]}]}]}]}}gen-ions-2hhb invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 600 (char 599)Prompt: Load 2HHB; protein as grey cartoon, and show the ions as purple spheres.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 600 (char 599)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/2hhb.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":"ion"},"children":[{"kind":"representation","params":{"type":"spacefill"},"children":[{"kind":"color","params":{"color":"purple"}}]}]}]}]}]}]}]}gen-ions-3ptb invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 600 (char 599)Prompt: Load 3PTB; protein as grey cartoon, and show the ions as purple spheres.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 600 (char 599)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/3ptb.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"protein"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"grey"}}]}]},{"kind":"component","params":{"selector":"ion"},"children":[{"kind":"representation","params":{"type":"spacefill"},"children":[{"kind":"color","params":{"color":"purple"}}]}]}]}]}]}]}]}gen-ligands-1cbs invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 608 (char 607)Prompt: Load 1CBS; show the protein as a grey cartoon and the ligands as purple ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 608 (char 607)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1cbs.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"protein"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"grey"}}]}]},{"kind":"component","params":{"selector":"ligand"},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"purple"}}]}]}]}]}]}]}]}]}gen-ligands-1hho invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 660 (char 659)Prompt: Load 1HHO; show the protein as a grey cartoon and the ligands as red ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 660 (char 659)
{"root": {"kind": "root", "children": [{"kind": "download", "params": {"url": "https://files.rcsb.org/download/1hho.cif"}, "children": [{"kind": "parse", "params": {"format": "mmcif"}, "children": [{"kind": "structure", "params": {"type": "model"}, "children": [{"kind": "component", "params": {"selector": "polymer"}, "children": [{"kind": "representation", "params": {"type": "cartoon"}, "children": [{"kind": "color", "params": {"color": "grey"}}]}]}, {"kind": "component", "params": {"selector": "ligand"}, "children": [{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [{"kind": "color", "params": {"color": "red"}}]}]}]}]}]}]}]}gen-ligands-2hhb invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 606 (char 605)Prompt: Load 2HHB; show the protein as a grey cartoon and the ligands as teal ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 606 (char 605)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/2hhb.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"protein"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"grey"}}]}]},{"kind":"component","params":{"selector":"ligand"},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"teal"}}]}]}]}]}]}]}]}gen-ligands-3ptb invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 663 (char 662)Prompt: Load 3PTB; show the protein as a grey cartoon and the ligands as orange ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 663 (char 662)
{"root": {"kind": "root", "children": [{"kind": "download", "params": {"url": "https://files.rcsb.org/download/3ptb.cif"}, "children": [{"kind": "parse", "params": {"format": "mmcif"}, "children": [{"kind": "structure", "params": {"type": "model"}, "children": [{"kind": "component", "params": {"selector": "polymer"}, "children": [{"kind": "representation", "params": {"type": "cartoon"}, "children": [{"kind": "color", "params": {"color": "gray"}}]}]}, {"kind": "component", "params": {"selector": "ligand"}, "children": [{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [{"kind": "color", "params": {"color": "orange"}}]}]}]}]}]}]}]}]}gen-range-1hho invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 722 (char 721)Prompt: Load 1HHO; protein as grey cartoon, and show residues 30-90 of chain A as orange ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 722 (char 721)
{"root": {"kind": "root", "children": [{"kind": "download", "params": {"url": "https://files.rcsb.org/download/1hho.cif"}, "children": [{"kind": "parse", "params": {"format": "mmcif"}, "children": [{"kind": "structure", "params": {"type": "model"}, "children": [{"kind": "component", "params": {"selector": "protein"}, "children": [{"kind": "representation", "params": {"type": "cartoon"}, "children": [{"kind": "color", "params": {"color": "gray"}}]}]}, {"kind": "component", "params": {"selector": {"auth_asym_id": "A", "beg_auth_seq_id": 30, "end_auth_seq_id": 90}}, "children": [{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [{"kind": "color", "params": {"color": "orange"}}]}]}]}]}]}]}]}}gen-range-1lyz invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 662 (char 661)Prompt: Load 1LYZ; protein as grey cartoon, and show residues 40-80 of chain A as orange ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 662 (char 661)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1lyz.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"protein"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"A","beg_auth_seq_id":40,"end_auth_seq_id":80}},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"orange"}}]}]}]}]}]}]}]}]}}gen-range-2hhb invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 662 (char 661)Prompt: Load 2HHB; protein as grey cartoon, and show residues 10-70 of chain B as orange ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 662 (char 661)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/2hhb.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"grey"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"B","beg_auth_seq_id":10,"end_auth_seq_id":70}},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"orange"}}]}]}]}]}]}]}]}]}"}gen-range-4ins invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 662 (char 661)Prompt: Load 4INS; protein as grey cartoon, and show residues 5-25 of chain B as orange ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 662 (char 661)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/4ins.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"protein"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"B","beg_auth_seq_id":5,"end_auth_seq_id":25}}, "children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"orange"}}]}]}]}]}]}]}]}"}]}]}}gen-surface-1cbs invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 429 (char 428)Prompt: Load 1CBS; render the protein as a steelblue molecular surface.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 429 (char 428)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1cbs.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"protein"},"children":[{"kind":"representation","params":{"type":"surface"},"children":[{"kind":"color","params":{"color":"steelblue"}}]}]}]}]}]}]}]}gen-surface-1hho invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 429 (char 428)Prompt: Load 1HHO; render the protein as a steelblue molecular surface.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 429 (char 428)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1hho.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"protein"},"children":[{"kind":"representation","params":{"type":"surface"},"children":[{"kind":"color","params":{"color":"steelblue"}}]}]}]}]}]}]}]}}gen-surface-1lyz invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 463 (char 462)Prompt: Load 1LYZ; render the protein as a khaki molecular surface.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 463 (char 462)
{"root": {"kind": "root", "children": [{"kind": "download", "params": {"url": "https://files.rcsb.org/download/1lyz.cif"}, "children": [{"kind": "parse", "params": {"format": "mmcif"}, "children": [{"kind": "structure", "params": {"type": "model"}, "children": [{"kind": "component", "params": {"selector": "protein"}, "children": [{"kind": "representation", "params": {"type": "surface"}, "children": [{"kind": "color", "params": {"color": "khaki"}}]}]}]}]}]}]}]}gen-surface-2hhb invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 426 (char 425)Prompt: Load 2HHB; render the protein as a salmon molecular surface.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 426 (char 425)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/2hhb.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"protein"},"children":[{"kind":"representation","params":{"type":"surface"},"children":[{"kind":"color","params":{"color":"salmon"}}]}]}]}]}]}]}]}]}gen-surface-3ptb invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 424 (char 423)Prompt: Load 3PTB; render the protein as a plum molecular surface.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 424 (char 423)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/3ptb.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"protein"},"children":[{"kind":"representation","params":{"type":"surface"},"children":[{"kind":"color","params":{"color":"plum"}}]}]}]}]}]}]}]}]}}gen-surface-4ins invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 426 (char 425)Prompt: Load 4INS; render the protein as a salmon molecular surface.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 426 (char 425)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/4ins.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"protein"},"children":[{"kind":"representation","params":{"type":"surface"},"children":[{"kind":"color","params":{"color":"salmon"}}]}]}]}]}]}]}]}grd-disulfide-1lyz invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 1074 (char 1073)Prompt: Load 1LYZ; protein as grey cartoon, and highlight the disulfide-bonded cysteines as yellow ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 1074 (char 1073)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1lyz.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"protein"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":[{"auth_asym_id":"A","auth_comp_id":"CYS","auth_seq_id":6},{"auth_asym_id":"A","auth_comp_id":"CYS","auth_seq_id":127},{"auth_asym_id":"A","auth_comp_id":"CYS","auth_seq_id":30},{"auth_asym_id":"A","auth_comp_id":"CYS","auth_seq_id":115},{"auth_asym_id":"A","auth_comp_id":"CYS","auth_seq_id":64},{"auth_asym_id":"A","auth_comp_id":"CYS","auth_seq_id":80},{"auth_asym_id":"A","auth_comp_id":"CYS","auth_seq_id":76},{"auth_asym_id":"A","auth_comp_id":"CYS","auth_seq_id":94}]},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"yellow"}}]}]}]}]}]}]}]}grd-disulfide-3ptb invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 701 (char 700)Prompt: Load 3PTB; protein as grey cartoon, and highlight the disulfide-bonded cysteines as yellow ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 701 (char 700)
{"root": {"kind": "root", "children": [{"kind": "download", "params": {"url": "https://files.rcsb.org/download/3ptb.cif"}, "children": [{"kind": "parse", "params": {"format": "mmcif"}, "children": [{"kind": "structure", "params": {"type": "model"}, "children": [{"kind": "component", "params": {"selector": "polymer"}, "children": [{"kind": "representation", "params": {"type": "cartoon"}, "children": [{"kind": "color", "params": {"color": "gray"}}]}]}, {"kind": "component", "params": {"selector": {"label_asym_id": "A", "label_comp_id": "CYS"}}, "children": [{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [{"kind": "color", "params": {"color": "yellow"}}]}]}]}]}]}]}]}grd-ligand-1cbs-rea invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 623 (char 622)Prompt: Load 1CBS; show the protein as a grey cartoon and the REA as orange ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 623 (char 622)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1cbs.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"protein"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"grey"}}]}]},{"kind":"component","params":{"selector":{"auth_comp_id":"REA"}}, "children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"orange"}}]}]}]}]}]}]}]}grd-ligand-1hho-hem invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 623 (char 622)Prompt: Load 1HHO; show the protein as a grey cartoon and the HEM as orange ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 623 (char 622)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1hho.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_comp_id":"HEM"}}, "children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"orange"}}]}]}]}]}]}]}]}grd-ligand-2hhb-hem invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 623 (char 622)Prompt: Load 2HHB; show the protein as a grey cartoon and the HEM as orange ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 623 (char 622)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/2hhb.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"protein"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_comp_id":"HEM"}}, "children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"orange"}}]}]}]}]}]}]}]}]}grd-ligand-3ptb-ca invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 622 (char 621)Prompt: Load 3PTB; show the protein as a grey cartoon and the CA as orange ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 622 (char 621)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/3ptb.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"protein"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"grey"}}]}]},{"kind":"component","params":{"selector":{"label_atom_id":"CA"}},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"orange"}}]}]}]}]}]}]}]}]}}grd-ligand-4ins-zn invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 622 (char 621)Prompt: Load 4INS; show the protein as a grey cartoon and the ZN as orange ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 622 (char 621)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/4ins.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_comp_id":"ZN"}}, "children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"orange"}}]}]}]}]}]}]}]}]}]}}int-001 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 1050 (char 1049)Prompt: In oxymyoglobin 1A6M, show the protein as a grey cartoon, His64 and the bound O2 as ball-and-stick, and draw the hydrogen bond from His64 NE2 to the O2 molecule's terminal oxygen (atom O2) as a dashed line labelled with its length.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 1050 (char 1049)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1a6m.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"protein"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"A","auth_seq_id":64}},"children":[{"kind":"representation","params":{"type":"ball_and_stick"}}]},{"kind":"component","params":{"selector":{"auth_comp_id":"OXY"}},"children":[{"kind":"representation","params":{"type":"ball_and_stick"}}]},{"kind":"primitives","params":{"color":"yellow","label_color":"yellow"},"children":[{"kind":"primitive","params":{"kind":"distance_measurement","start":{"auth_asym_id":"A","auth_seq_id":64,"label_atom_id":"NE2"},"end":{"auth_comp_id":"OXY","label_atom_id":"O2"},"radius":0.06,"dash_length":0.15,"label_template":"{{distance}}"}}]}]}]}]}]}]}int-002 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 1067 (char 1066)Prompt: Load 1A6M with the protein as a grey cartoon. Show the heme and the proximal histidine as ball-and-stick and measure the distance from the heme iron to the histidine's coordinating nitrogen.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 1067 (char 1066)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1a6m.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"protein"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_comp_id":"HEM"}},"children":[{"kind":"representation","params":{"type":"ball_and_stick"}}]},{"kind":"component","params":{"selector":{"auth_asym_id":"A","auth_seq_id":93}},"children":[{"kind":"representation","params":{"type":"ball_and_stick"}}]},{"kind":"primitives","params":{"color":"yellow","label_color":"yellow"},"children":[{"kind":"primitive","params":{"kind":"distance_measurement","start":{"auth_asym_id":"A","auth_comp_id":"HEM","auth_atom_id":"FE"},"end":{"auth_asym_id":"A","auth_seq_id":93,"auth_atom_id":"NE2"},"radius":0.06,"dash_length":0.15,"label_template":"{{distance}}"}}]}]}]}]}]}]}"}int-003 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 1268 (char 1267)Prompt: In trypsin (3PTB), show the protein as a grey cartoon and the catalytic triad (His57, Asp102, Ser195) as ball-and-stick. Draw the two triad hydrogen bonds as dashed lines with their lengths.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 1268 (char 1267)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/3ptb.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"protein"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":[{"auth_asym_id":"A","auth_seq_id":57},{"auth_asym_id":"A","auth_seq_id":102},{"auth_asym_id":"A","auth_seq_id":195}]},"children":[{"kind":"representation","params":{"type":"ball_and_stick"}}]},{"kind":"primitives","params":{"color":"yellow","label_color":"yellow"},"children":[{"kind":"primitive","params":{"kind":"distance_measurement","start":{"auth_asym_id":"A","auth_seq_id":57,"label_atom_id":"ND1"},"end":{"auth_asym_id":"A","auth_seq_id":102,"label_atom_id":"OD2"},"radius":0.06,"dash_length":0.15,"label_template":"{{distance}}"}},{"kind":"primitive","params":{"kind":"distance_measurement","start":{"auth_asym_id":"A","auth_seq_id":57,"label_atom_id":"NE2"},"end":{"auth_asym_id":"A","auth_seq_id":195,"label_atom_id":"OG"},"radius":0.06,"dash_length":0.15,"label_template":"{{distance}}"}}]}]}]}]}]}]}]}}int-004 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 616 (char 615)Prompt: Load 1A6M with the protein as a grey cartoon and show all the non-covalent interactions (hydrogen bonds, metal contacts) around the bound oxygen molecule.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 616 (char 615)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1a6m.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"protein"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"grey"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"A","label_comp_id":"OXY"}},"custom":{"molstar_show_non_covalent_interactions":true,"molstar_non_covalent_interactions_radius_ang":5}}]}]}]}]}]}]}}int-005 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 728 (char 727)Prompt: Show trypsin 3PTB as a grey cartoon and display the interactions between the benzamidine inhibitor and the protein.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 728 (char 727)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/3ptb.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer","custom":{"molstar_show_non_covalent_interactions":true,"molstar_non_covalent_interactions_radius_ang":5}},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_comp_id":"BZN"}},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"orange"}}]}]}]}]}]}]}]}int-006 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 667 (char 666)Prompt: Load haemoglobin 1HHO; show the protein as a 50% transparent surface and the heme groups as ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 667 (char 666)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1hho.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"protein"},"children":[{"kind":"representation","params":{"type":"surface"},"children":[{"kind":"color","params":{"color":"gray"}},{"kind":"opacity","params":{"opacity":0.5}}]}]},{"kind":"component","params":{"selector":{"auth_comp_id":"HEM"}}, "children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"orange"}}]}]}]}]}]}]}]}res-cftr invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 462 (char 461)Prompt: show me the CFTR channel
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 462 (char 461)
{"root": {"kind": "root", "children": [{"kind": "download", "params": {"url": "https://files.rcsb.org/download/6djz.cif"}, "children": [{"kind": "parse", "params": {"format": "mmcif"}, "children": [{"kind": "structure", "params": {"type": "model"}, "children": [{"kind": "component", "params": {"selector": "polymer"}, "children": [{"kind": "representation", "params": {"type": "cartoon"}, "children": [{"kind": "color", "params": {"color": "gray"}}]}]}]}]}]}]}]}res-gfp invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 463 (char 462)Prompt: show green fluorescent protein from Aequorea victoria
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 463 (char 462)
{"root": {"kind": "root", "children": [{"kind": "download", "params": {"url": "https://files.rcsb.org/download/1ema.cif"}, "children": [{"kind": "parse", "params": {"format": "mmcif"}, "children": [{"kind": "structure", "params": {"type": "model"}, "children": [{"kind": "component", "params": {"selector": "protein"}, "children": [{"kind": "representation", "params": {"type": "cartoon"}, "children": [{"kind": "color", "params": {"color": "green"}}]}]}]}]}]}]}]}res-lysozyme invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 462 (char 461)Prompt: Show me hen egg white lysozyme
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 462 (char 461)
{"root": {"kind": "root", "children": [{"kind": "download", "params": {"url": "https://files.rcsb.org/download/1hel.cif"}, "children": [{"kind": "parse", "params": {"format": "mmcif"}, "children": [{"kind": "structure", "params": {"type": "model"}, "children": [{"kind": "component", "params": {"selector": "polymer"}, "children": [{"kind": "representation", "params": {"type": "cartoon"}, "children": [{"kind": "color", "params": {"color": "gray"}}]}]}]}]}]}]}]}res-myoglobin invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 467 (char 466)Prompt: Show me sperm whale myoglobin
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 467 (char 466)
{"root": {"kind": "root", "children": [{"kind": "download", "params": {"url": "https://files.rcsb.org/download/1mbn.cif"}, "children": [{"kind": "parse", "params": {"format": "mmcif"}, "children": [{"kind": "structure", "params": {"type": "model"}, "children": [{"kind": "component", "params": {"selector": "polymer"}, "children": [{"kind": "representation", "params": {"type": "cartoon"}, "children": [{"kind": "color", "params": {"color": "slategray"}}]}]}]}]}]}]}]}res-pcsk9 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 424 (char 423)Prompt: show the structure of PCSK9
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 424 (char 423)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/2p16.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]}]}]}]}]}]}}res-pde5a invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 424 (char 423)Prompt: I wanna see a structure of PDE5A
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 424 (char 423)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1udt.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]}]}]}]}]}]}clinvar-1tup-F109 invalid MVS Node of kind "color" cannot appear as a child of "component". Allowed parents for "color" are: "representation", "volume_representation"Prompt: In p53 (PDB 1TUP), chain A, highlight the residue affected by the pathogenic ClinVar variant F109V as red ball-and-stick.
Mol* validator:
Node of kind "color" cannot appear as a child of "component". Allowed parents for "color" are: "representation", "volume_representation"
{
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/1TUP.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model"
},
"children": [
{
"kind": "component",
"params": {
"selector": "polymer"
},
"children": [
{
"kind": "representation",
"params": {
"type": "cartoon"
},
"children": [
{
"kind": "color",
"params": {
"color": "gray"
}
}
]
}
]
},
{
"kind": "component",
"params": {
"selector": {
"auth_asym_id": "A",
"auth_seq_id": 109
}
},
"children": [
{
"kind": "representation",
"params": {
"type": "ball_and_stick"
}
},
{
"kind": "color",
"params": {
"color": "red"
}
}
]
}
]
}
]
}
]
}
]
}
}res-pcsk9 invalid MVS Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_sourcePrompt: show the structure of PCSK9
Mol* validator:
Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_source", "primitives", "primitives_from_uri", "volume", "volume_representation"
{
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/7S5H.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model"
},
"children": [
{
"kind": "component",
"params": {
"selector": "polymer"
},
"children": [
{
"kind": "representation",
"params": {
"type": "cartoon"
},
"children": [
{
"kind": "color",
"params": {
"color": "gray"
},
"custom": {
"molstar_color_theme_name": "secondary-structure"
}
}
]
}
]
},
{
"kind": "focus",
"params": {
"radius": 5
}
}
]
}
]
}
]
}
]
}
}mvs-001 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 462 (char 461)Prompt: Load haemoglobin (PDB 1HHO) and show the protein as a grey cartoon.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 462 (char 461)
{"root": {"kind": "root", "children": [{"kind": "download", "params": {"url": "https://files.rcsb.org/download/1hho.cif"}, "children": [{"kind": "parse", "params": {"format": "mmcif"}, "children": [{"kind": "structure", "params": {"type": "model"}, "children": [{"kind": "component", "params": {"selector": "protein"}, "children": [{"kind": "representation", "params": {"type": "cartoon"}, "children": [{"kind": "color", "params": {"color": "gray"}}]}]}]}]}]}]}]}mvs-004 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 659 (char 658)Prompt: Load HIV-1 protease (1HVR); protein as grey cartoon, the bound inhibitor as magenta ball-and-stick, and focus the camera on the inhibitor.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 659 (char 658)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1hvr.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"A","auth_comp_id":"XK2"}},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"magenta"}}]},{"kind":"focus"}]}]}]}]}]}]}clinvar-1tup-F109 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 500 (char 499)Prompt: In p53 (PDB 1TUP), chain A, highlight the residue affected by the pathogenic ClinVar variant F109V as red ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 500 (char 499)
{"root": {"kind": "root", "children": [{"kind": "download", "params": {"url": "https://files.rcsb.org/download/1TUP.cif"}, "children": [{"kind": "parse", "params": {"format": "mmcif"}, "children": [{"kind": "structure", "params": {"type": "model"}, "children": [{"kind": "component", "params": {"selector": {"auth_asym_id": "A", "auth_seq_id": 109}}, "children": [{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [{"kind": "color", "params": {"color": "red"}}]}]}]}]}]}]}]}hotspots-1tup invalid JSON no JSON object found in outputPrompt: In p53 (PDB 1TUP), chain A, highlight the 6 mutational hotspot residues — the positions carrying the most pathogenic ClinVar variants — as red spheres.
Parser: no JSON object found in output
The model returned an empty response.
gen-chain-1lyz invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 542 (char 541)Prompt: Load 1LYZ; show everything as a grey cartoon, then colour chain A green.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 542 (char 541)
{"root": {"kind": "root", "children": [{"kind": "download", "params": {"url": "https://files.rcsb.org/download/1lyz.cif"}, "children": [{"kind": "parse", "params": {"format": "mmcif"}, "children": [{"kind": "structure", "params": {"type": "model"}, "children": [{"kind": "component", "params": {"selector": "all"}, "children": [{"kind": "representation", "params": {"type": "cartoon"}, "children": [{"kind": "color", "params": {"color": "gray"}}, {"kind": "color", "params": {"color": "green", "selector": {"auth_asym_id": "A"}}}]}]}]}]}]}]}]}gen-focus-3ptb invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 683 (char 682)Prompt: Load 3PTB; grey cartoon protein, magenta ball-and-stick ligands, and focus the camera on the ligand.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 683 (char 682)
{"root": {"kind": "root", "children": [{"kind": "download", "params": {"url": "https://files.rcsb.org/download/3ptb.cif"}, "children": [{"kind": "parse", "params": {"format": "mmcif"}, "children": [{"kind": "structure", "params": {"type": "model"}, "children": [{"kind": "component", "params": {"selector": "protein"}, "children": [{"kind": "representation", "params": {"type": "cartoon"}, "children": [{"kind": "color", "params": {"color": "gray"}}]}]}, {"kind": "component", "params": {"selector": "ligand"}, "children": [{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [{"kind": "color", "params": {"color": "magenta"}}]}, {"kind": "focus"}]}]}]}]}]}]}gen-ligands-3ptb invalid JSON no JSON object found in outputPrompt: Load 3PTB; show the protein as a grey cartoon and the ligands as orange ball-and-stick.
Parser: no JSON object found in output
The model returned an empty response.
gen-range-3ptb invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 723 (char 722)Prompt: Load 3PTB; protein as grey cartoon, and show residues 50-110 of chain A as orange ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 723 (char 722)
{"root": {"kind": "root", "children": [{"kind": "download", "params": {"url": "https://files.rcsb.org/download/3ptb.cif"}, "children": [{"kind": "parse", "params": {"format": "mmcif"}, "children": [{"kind": "structure", "params": {"type": "model"}, "children": [{"kind": "component", "params": {"selector": "protein"}, "children": [{"kind": "representation", "params": {"type": "cartoon"}, "children": [{"kind": "color", "params": {"color": "gray"}}]}]}, {"kind": "component", "params": {"selector": {"auth_asym_id": "A", "beg_auth_seq_id": 50, "end_auth_seq_id": 110}}, "children": [{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [{"kind": "color", "params": {"color": "orange"}}]}]}]}]}]}]}]}int-002 invalid JSON no JSON object found in outputPrompt: Load 1A6M with the protein as a grey cartoon. Show the heme and the proximal histidine as ball-and-stick and measure the distance from the heme iron to the histidine's coordinating nitrogen.
Parser: no JSON object found in output
The model returned an empty response.
int-003 invalid JSON no JSON object found in outputPrompt: In trypsin (3PTB), show the protein as a grey cartoon and the catalytic triad (His57, Asp102, Ser195) as ball-and-stick. Draw the two triad hydrogen bonds as dashed lines with their lengths.
Parser: no JSON object found in output
The model returned an empty response.
int-005 invalid JSON no JSON object found in outputPrompt: Show trypsin 3PTB as a grey cartoon and display the interactions between the benzamidine inhibitor and the protein.
Parser: no JSON object found in output
The model returned an empty response.
res-cftr invalid MVS Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_sourcePrompt: show me the CFTR channel
Mol* validator:
Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_source", "primitives", "primitives_from_uri", "volume", "volume_representation"
{
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/9MXL.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model"
},
"children": [
{
"kind": "component",
"params": {
"selector": "polymer"
},
"children": [
{
"kind": "representation",
"params": {
"type": "cartoon"
},
"children": [
{
"kind": "color",
"params": {
"color": "steelblue"
}
}
]
}
]
},
{
"kind": "component",
"params": {
"selector": "ligand"
},
"children": [
{
"kind": "representation",
"params": {
"type": "ball_and_stick"
},
"children": [
{
"kind": "color",
"params": {
"color": "orange"
}
}
]
}
]
},
{
"kind": "focus"
}
]
}
]
}
]
}
]
}
}res-gfp invalid MVS Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_sourcePrompt: show green fluorescent protein from Aequorea victoria
Mol* validator:
Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_source", "primitives", "primitives_from_uri", "volume", "volume_representation"
{
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/6L27.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model"
},
"children": [
{
"kind": "component",
"params": {
"selector": "protein"
},
"children": [
{
"kind": "representation",
"params": {
"type": "cartoon"
},
"children": [
{
"kind": "color",
"params": {
"color": "green"
}
}
]
}
]
},
{
"kind": "focus"
}
]
}
]
}
]
}
]
}
}res-lysozyme invalid MVS Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_sourcePrompt: Show me hen egg white lysozyme
Mol* validator:
Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_source", "primitives", "primitives_from_uri", "volume", "volume_representation"
{
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/2vb1.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model"
},
"children": [
{
"kind": "component",
"params": {
"selector": "protein"
},
"children": [
{
"kind": "representation",
"params": {
"type": "cartoon"
},
"children": [
{
"kind": "color",
"params": {
"color": "steelblue"
}
}
]
}
]
},
{
"kind": "component",
"params": {
"selector": "ligand"
},
"children": [
{
"kind": "representation",
"params": {
"type": "ball_and_stick"
},
"children": [
{
"kind": "color",
"params": {
"color": "orange"
}
}
]
}
]
},
{
"kind": "focus"
}
]
}
]
}
]
}
]
}
}res-myoglobin invalid MVS Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_sourcePrompt: Show me sperm whale myoglobin
Mol* validator:
Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_source", "primitives", "primitives_from_uri", "volume", "volume_representation"
{
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/5YCE.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model"
},
"children": [
{
"kind": "component",
"params": {
"selector": "protein"
},
"children": [
{
"kind": "representation",
"params": {
"type": "cartoon"
},
"children": [
{
"kind": "color",
"params": {
"color": "steelblue"
}
}
]
}
]
},
{
"kind": "component",
"params": {
"selector": "ligand"
},
"children": [
{
"kind": "representation",
"params": {
"type": "ball_and_stick"
},
"children": [
{
"kind": "color",
"params": {
"color": "red"
}
}
]
}
]
},
{
"kind": "focus"
}
]
}
]
}
]
}
]
}
}res-pcsk9 invalid MVS Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_sourcePrompt: show the structure of PCSK9
Mol* validator:
Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_source", "primitives", "primitives_from_uri", "volume", "volume_representation"
{
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/7S5H.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model"
},
"children": [
{
"kind": "component",
"params": {
"selector": "protein"
},
"children": [
{
"kind": "representation",
"params": {
"type": "cartoon"
},
"children": [
{
"kind": "color",
"params": {
"color": "steelblue"
}
}
]
}
]
},
{
"kind": "component",
"params": {
"selector": "ligand"
},
"children": [
{
"kind": "representation",
"params": {
"type": "ball_and_stick"
},
"children": [
{
"kind": "color",
"params": {
"color": "orange"
}
}
]
}
]
},
{
"kind": "focus"
}
]
}
]
}
]
}
]
}
}hotspots-1tup invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 184 (char 183)Prompt: In p53 (PDB 1TUP), chain A, highlight the 6 mutational hotspot residues — the positions carrying the most pathogenic ClinVar variants — as red spheres.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 184 (char 183)
{"root": {"kind": "root", "children": [{"kind": "download", "params": {"url": "https://files.rcsb.org/download/1tup.cif"}, "children": [{"kind": "parse", "params": {"format": "mmcif"}, "children": [{"kind": "structure", "params": {"type": "modelgen-range-4ins invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 466 (char 465)Prompt: Load 4INS; protein as grey cartoon, and show residues 5-25 of chain B as orange ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 466 (char 465)
{"root": {"kind": "root", "children": [{"kind": "download", "params": {"url": "https://files.rcsb.org/download/4ins.cif"}, "children": [{"kind": "parse", "params": {"format": "mmcif"}, "children": [{"kind": "structure", "params": {"type": "model"}, "children": [{"kind": "component", "params": {"selector": "protein"}, "children": [{"kind": "representation", "params": {"type": "cartoon"}, "children": [{"kind": "color", "params": {"color": "gray"}}]}]}, "children": [{"kind": "component", "params": {"selector": {"auth_asym_id": "B", "beg_auth_seq_id": 5, "end_auth_seq_id": 25}}, "children": [{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [{"kind": "color", "params": {"color": "orange"}}]}]}]}]}]}]}]}}int-001 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 184 (char 183)Prompt: In oxymyoglobin 1A6M, show the protein as a grey cartoon, His64 and the bound O2 as ball-and-stick, and draw the hydrogen bond from His64 NE2 to the O2 molecule's terminal oxygen (atom O2) as a dashed line labelled with its length.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 184 (char 183)
{"root": {"kind": "root", "children": [{"kind": "download", "params": {"url": "https://files.rcsb.org/download/1a6m.cif"}, "children": [{"kind": "parse", "params": {"format": "mmcif"}, "children": [{"kind": "structure", "params": {"type":int-002 invalid JSON JSON parse error: Expecting ',' delimiter: line 9 column 10 (char 177)Prompt: Load 1A6M with the protein as a grey cartoon. Show the heme and the proximal histidine as ball-and-stick and measure the distance from the heme iron to the histidine's coordinating nitrogen.
Parser: JSON parse error: Expecting ',' delimiter: line 9 column 10 (char 177)
```json
{
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/1a6m.cif"
},
"children": [
{
int-003 invalid JSON no JSON object found in outputPrompt: In trypsin (3PTB), show the protein as a grey cartoon and the catalytic triad (His57, Asp102, Ser195) as ball-and-stick. Draw the two triad hydrogen bonds as dashed lines with their lengths.
Parser: no JSON object found in output
``` Wait, the prompt asks to show "lengths". Yes, distance_measurement will display it. What about focusing on the catalytic triad? It's usually good to add a `focus` node for the catalytic triad component, but the user didn't explicitly ask to focus. It says "show ...". Let's add a `focus` on the catalytic triad component so
res-cftr invalid MVS Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_sourcePrompt: show me the CFTR channel
Mol* validator:
Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_source", "primitives", "primitives_from_uri", "volume", "volume_representation"
{
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/9mxl.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model"
},
"children": [
{
"kind": "component",
"params": {
"selector": "polymer"
},
"children": [
{
"kind": "representation",
"params": {
"type": "cartoon"
},
"children": [
{
"kind": "color",
"params": {
"color": "white"
},
"custom": {
"molstar_color_theme_name": "chain-id"
}
}
]
}
]
},
{
"kind": "component",
"params": {
"selector": "ligand"
},
"children": [
{
"kind": "representation",
"params": {
"type": "ball_and_stick"
},
"children": [
{
"kind": "color",
"params": {
"color": "orange"
}
}
]
}
]
},
{
"kind": "focus"
}
]
}
]
}
]
}
]
}
}res-pcsk9 invalid MVS Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_sourcePrompt: show the structure of PCSK9
Mol* validator:
Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_source", "primitives", "primitives_from_uri", "volume", "volume_representation"
{
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/7s5h.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "assembly"
},
"children": [
{
"kind": "component",
"params": {
"selector": "polymer"
},
"children": [
{
"kind": "representation",
"params": {
"type": "cartoon"
},
"children": [
{
"kind": "color",
"params": {
"color": "gray"
},
"custom": {
"molstar_color_theme_name": "chain-id"
}
}
]
}
]
},
{
"kind": "component",
"params": {
"selector": "ligand"
},
"children": [
{
"kind": "representation",
"params": {
"type": "ball_and_stick"
},
"children": [
{
"kind": "color",
"params": {
"color": "gray"
},
"custom": {
"molstar_color_theme_name": "element-symbol"
}
}
]
}
]
},
{
"kind": "focus"
}
]
}
]
}
]
}
]
}
}gen-chain-4ins invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 602 (char 601)Prompt: Load 4INS; show everything as a grey cartoon, then colour chain B blue.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 602 (char 601)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/4ins.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"B"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"blue"}}]}]}]}]}]}]}}gen-ions-1hho invalid JSON JSON parse error: Extra data: line 13 column 1 (char 746)Prompt: Load 1HHO; protein as grey cartoon, and show the ions as purple spheres.
Parser: JSON parse error: Extra data: line 13 column 1 (char 746)
{"root": {"kind": "root", "children": [
{"kind": "download", "params": {"url": "https://files.rcsb.org/download/1hho.cif"}, "children": [
{"kind": "parse", "params": {"format": "mmcif"}, "children": [
{"kind": "structure", "params": {"type": "model"}, "children": [
{"kind": "component", "params": {"selector": "protein"}, "children": [
{"kind": "representation", "params": {"type": "cartoon"}, "children": [
{"kind": "color", "params": {"color": "gray"}}]}]},
{"kind": "component", "params": {"selector": "ion"}, "children": [
{"kind": "representation", "params": {"type": "spacefill"}, "children": [
{"kind": "color", "params": {"color": "purple"}}]}]}
]}]}]
}]}}
}grd-disulfide-3ptb invalid JSON no JSON object found in outputPrompt: Load 3PTB; protein as grey cartoon, and highlight the disulfide-bonded cysteines as yellow ball-and-stick.
Parser: no JSON object found in output
The model returned an empty response.
res-gfp invalid MVS Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_sourcePrompt: show green fluorescent protein from Aequorea victoria
Mol* validator:
Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_source", "primitives", "primitives_from_uri", "volume", "volume_representation"
{
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/2wur.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model"
},
"children": [
{
"kind": "component",
"params": {
"selector": "polymer"
},
"children": [
{
"kind": "representation",
"params": {
"type": "cartoon"
},
"children": [
{
"kind": "color",
"params": {
"color": "#00C800"
}
}
]
}
]
},
{
"kind": "component",
"params": {
"selector": "ligand"
},
"children": [
{
"kind": "representation",
"params": {
"type": "ball_and_stick"
},
"children": [
{
"kind": "color",
"params": {
"color": "yellow"
}
}
]
}
]
},
{
"kind": "focus",
"params": {
"radius": 30
}
}
]
}
]
}
]
}
]
}
}res-lysozyme invalid MVS Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_sourcePrompt: Show me hen egg white lysozyme
Mol* validator:
Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_source", "primitives", "primitives_from_uri", "volume", "volume_representation"
{
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/2vb1.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model"
},
"children": [
{
"kind": "component",
"params": {
"selector": "protein"
},
"children": [
{
"kind": "representation",
"params": {
"type": "cartoon"
},
"children": [
{
"kind": "color",
"params": {
"color": "white"
},
"custom": {
"molstar_color_theme_name": "sequence-id"
}
}
]
}
]
},
{
"kind": "focus",
"params": {
"radius": 30
}
}
]
}
]
}
]
}
]
}
}res-myoglobin invalid MVS Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_sourcePrompt: Show me sperm whale myoglobin
Mol* validator:
Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_source", "primitives", "primitives_from_uri", "volume", "volume_representation"
{
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/1a6m.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model"
},
"children": [
{
"kind": "component",
"params": {
"selector": "protein"
},
"children": [
{
"kind": "representation",
"params": {
"type": "cartoon"
},
"children": [
{
"kind": "color",
"params": {
"color": "steelblue"
}
}
]
}
]
},
{
"kind": "component",
"params": {
"selector": {
"label_comp_id": "HEM"
}
},
"children": [
{
"kind": "representation",
"params": {
"type": "ball_and_stick"
},
"children": [
{
"kind": "color",
"params": {
"color": "orange"
}
}
]
}
]
},
{
"kind": "component",
"params": {
"selector": {
"label_comp_id": "OXY"
}
},
"children": [
{
"kind": "representation",
"params": {
"type": "ball_and_stick"
},
"children": [
{
"kind": "color",
"params": {
"color": "red"
}
}
]
}
]
},
{
"kind": "focus",
"params": {
"radius": 12
}
}
]
}
]
}
]
}
]
}
}mvs-004 invalid MVS Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_sourcePrompt: Load HIV-1 protease (1HVR); protein as grey cartoon, the bound inhibitor as magenta ball-and-stick, and focus the camera on the inhibitor.
Mol* validator:
Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_source", "primitives", "primitives_from_uri", "volume", "volume_representation"
{
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/1hvr.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model"
},
"children": [
{
"kind": "component",
"params": {
"selector": "polymer"
},
"children": [
{
"kind": "representation",
"params": {
"type": "cartoon"
},
"children": [
{
"kind": "color",
"params": {
"color": "gray"
}
}
]
}
]
},
{
"kind": "component",
"params": {
"selector": {
"auth_asym_id": "A",
"auth_seq_id": 263
}
},
"children": [
{
"kind": "representation",
"params": {
"type": "ball_and_stick"
},
"children": [
{
"kind": "color",
"params": {
"color": "magenta"
}
}
]
}
]
},
{
"kind": "focus",
"params": {
"radius": 5
}
}
]
}
]
}
]
}
]
}
}named-1tup-175 invalid MVS Invalid parameters for node of kind "component": Missing required parameter "selector".Prompt: In p53 (PDB 1TUP), chain A, select the residue at canonical UniProt position 175 and show it as blue ball-and-stick.
Mol* validator:
Invalid parameters for node of kind "component": Missing required parameter "selector".
{
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/1tup.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model"
},
"children": [
{
"kind": "component",
"params": {
"auth_asym_id": "A",
"auth_seq_id": 175
},
"children": [
{
"kind": "representation",
"params": {
"type": "ball_and_stick"
},
"children": [
{
"kind": "color",
"params": {
"color": "blue"
}
}
]
}
]
}
]
}
]
}
]
}
]
}
}gen-focus-1cbs invalid MVS Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_sourcePrompt: Load 1CBS; grey cartoon protein, magenta ball-and-stick ligands, and focus the camera on the ligand.
Mol* validator:
Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_source", "primitives", "primitives_from_uri", "volume", "volume_representation"
{
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/1cbs.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model"
},
"children": [
{
"kind": "component",
"params": {
"selector": "polymer"
},
"children": [
{
"kind": "representation",
"params": {
"type": "cartoon"
},
"children": [
{
"kind": "color",
"params": {
"color": "gray"
}
}
]
}
]
},
{
"kind": "component",
"params": {
"selector": {
"auth_asym_id": "A",
"auth_seq_id": 200
}
},
"children": [
{
"kind": "representation",
"params": {
"type": "ball_and_stick"
},
"children": [
{
"kind": "color",
"params": {
"color": "magenta"
}
}
]
}
]
},
{
"kind": "focus",
"params": {
"radius": 5
}
}
]
}
]
}
]
}
]
}
}gen-focus-1hho invalid MVS Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_sourcePrompt: Load 1HHO; grey cartoon protein, magenta ball-and-stick ligands, and focus the camera on the ligand.
Mol* validator:
Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_source", "primitives", "primitives_from_uri", "volume", "volume_representation"
{
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/1hho.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model"
},
"children": [
{
"kind": "component",
"params": {
"selector": "polymer"
},
"children": [
{
"kind": "representation",
"params": {
"type": "cartoon"
},
"children": [
{
"kind": "color",
"params": {
"color": "gray"
}
}
]
}
]
},
{
"kind": "component",
"params": {
"selector": "ligand"
},
"children": [
{
"kind": "representation",
"params": {
"type": "ball_and_stick"
},
"children": [
{
"kind": "color",
"params": {
"color": "magenta"
}
}
]
}
]
},
{
"kind": "focus",
"params": {}
}
]
}
]
}
]
}
]
}
}gen-focus-2hhb invalid MVS Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_sourcePrompt: Load 2HHB; grey cartoon protein, magenta ball-and-stick ligands, and focus the camera on the ligand.
Mol* validator:
Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_source", "primitives", "primitives_from_uri", "volume", "volume_representation"
{
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/2hhb.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model"
},
"children": [
{
"kind": "component",
"params": {
"selector": "polymer"
},
"children": [
{
"kind": "representation",
"params": {
"type": "cartoon"
},
"children": [
{
"kind": "color",
"params": {
"color": "gray"
}
}
]
}
]
},
{
"kind": "component",
"params": {
"selector": "ligand"
},
"children": [
{
"kind": "representation",
"params": {
"type": "ball_and_stick"
},
"children": [
{
"kind": "color",
"params": {
"color": "magenta"
}
}
]
}
]
},
{
"kind": "focus",
"params": {
"radius": 5
}
}
]
}
]
}
]
}
]
}
}gen-focus-3ptb invalid MVS Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_sourcePrompt: Load 3PTB; grey cartoon protein, magenta ball-and-stick ligands, and focus the camera on the ligand.
Mol* validator:
Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_source", "primitives", "primitives_from_uri", "volume", "volume_representation"
{
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/3ptb.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model"
},
"children": [
{
"kind": "component",
"params": {
"selector": "polymer"
},
"children": [
{
"kind": "representation",
"params": {
"type": "cartoon"
},
"children": [
{
"kind": "color",
"params": {
"color": "gray"
}
}
]
}
]
},
{
"kind": "component",
"params": {
"selector": {
"auth_asym_id": "A",
"auth_comp_id": "BEN"
}
},
"children": [
{
"kind": "representation",
"params": {
"type": "ball_and_stick"
},
"children": [
{
"kind": "color",
"params": {
"color": "magenta"
}
}
]
}
]
},
{
"kind": "focus",
"params": {
"radius": 5
}
}
]
}
]
}
]
}
]
}
}clinvar-1tup-S241 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 650 (char 649)Prompt: In p53 (PDB 1TUP), chain A, highlight the residue affected by the pathogenic ClinVar variant S241Y as red ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 650 (char 649)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1tup.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"protein"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"A","auth_seq_id":241}},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"red"}}]},{"kind":"focus"}]}]}]}]}}]}gen-chain-1cbs invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 488 (char 487)Prompt: Load 1CBS; show everything as a grey cartoon, then colour chain A purple.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 488 (char 487)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1cbs.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}},{"kind":"color","params":{"color":"purple","selector":{"auth_asym_id":"A"}}]}]}]}]}]}]}}gen-chain-1hho invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 485 (char 484)Prompt: Load 1HHO; show everything as a grey cartoon, then colour chain A red.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 485 (char 484)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1hho.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}},{"kind":"color","params":{"color":"red","selector":{"auth_asym_id":"A"}}]}]}]}]}]}]}}gen-focus-3ptb invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 644 (char 643)Prompt: Load 3PTB; grey cartoon protein, magenta ball-and-stick ligands, and focus the camera on the ligand.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 644 (char 643)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/3ptb.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"protein"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"label_comp_id":"BEN"},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"magenta"}}]},{"kind":"focus","params":{}}]}]}]}]}]}}grd-disulfide-4ins invalid JSON no JSON object found in outputPrompt: Load 4INS; protein as grey cartoon, and highlight the disulfide-bonded cysteines as yellow ball-and-stick.
Parser: no JSON object found in output
The model returned an empty response.
int-003 invalid JSON JSON parse error: Expecting ',' delimiter: line 20 column 83 (char 1319)Prompt: In trypsin (3PTB), show the protein as a grey cartoon and the catalytic triad (His57, Asp102, Ser195) as ball-and-stick. Draw the two triad hydrogen bonds as dashed lines with their lengths.
Parser: JSON parse error: Expecting ',' delimiter: line 20 column 83 (char 1319)
```json
{"root": {"kind": "root", "children": [
{"kind": "download", "params": {"url": "https://files.rcsb.org/download/3ptb.cif"},
"children": [
{"kind": "parse", "params": {"format": "mmcif"}, "children": [
{"kind": "structure", "params": {"type": "model"}, "children": [
{"kind": "component", "params": {"selector": "protein"}, "children": [
{"kind": "representation", "params": {"type": "cartoon"}, "children": [
{"kind": "color", "params": {"color": "gray"}}]}]},
{"kind": "component", "params": {"selector": [
{"auth_asym_id": "A", "auth_seq_id": 57},
{"auth_asym_id": "A", "auth_seq_id": 102},
{"auth_asym_id": "A", "auth_seq_id": 195}
]}, "children": [
{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [
{"kind": "color", "params": {"color": "lightgreen"}}]}]},
{"kind": "primitives", "params": {"color": "yellow", "label_color": "yellow"}, "children": [
{"kind": "primitive", "params": {"kind": "distance_measurement",
"start": {"auth_asym_id": "A", "auth_seq_id": 57, "label_atom_id": "ND1"},
"end": {"auth_asym_id": "A", "auth_seq_id": 102, "label_atom_id": "OD1"},
"radius": 0.06, "dash_length": 0.15, "label_template": "{{distance}}"}}},
{"kind": "primitive", "params": {"kind": "distance_measurement",
"start": {"auth_asym_id": "A", "auth_seq_id": 195, "label_atom_id": "OG"},
"end": {"auth_asym_id": "A", "auth_seq_id": 57, "label_atom_id": "NE2"},
"radius": 0.06, "dash_length": 0.15, "label_template": "{{distance}}"}}]}
]}]}]}
]}}
```int-004 invalid JSON JSON parse error: Expecting ',' delimiter: line 10 column 6 (char 733)Prompt: Load 1A6M with the protein as a grey cartoon and show all the non-covalent interactions (hydrogen bonds, metal contacts) around the bound oxygen molecule.
Parser: JSON parse error: Expecting ',' delimiter: line 10 column 6 (char 733)
```json
{"root": {"kind": "root", "children": [
{"kind": "download", "params": {"url": "https://files.rcsb.org/download/1a6m.cif"},
"children": [
{"kind": "parse", "params": {"format": "mmcif"}, "children": [
{"kind": "structure", "params": {"type": "model"}, "children": [
{"kind": "component", "params": {"selector": "polymer"}, "children": [
{"kind": "representation", "params": {"type": "cartoon"}, "children": [
{"kind": "color", "params": {"color": "gray"}}]}]},
{"kind": "component", "params": {"selector": {"auth_asym_id": "A", "label_comp_id": "OXY"}, "custom": {"molstar_show_non_covalent_interactions": true, "molstar_non_covalent_interactions_radius_ang": 5}, "children": []}
]}]}]}
]}}
```res-pcsk9 invalid JSON JSON parse error: Expecting ',' delimiter: line 14 column 3 (char 841)Prompt: show the structure of PCSK9
Parser: JSON parse error: Expecting ',' delimiter: line 14 column 3 (char 841)
```json
{"root": {"kind": "root", "children": [
{"kind": "download", "params": {"url": "https://files.rcsb.org/download/7s5h.cif"},
"children": [
{"kind": "parse", "params": {"format": "mmcif"}, "children": [
{"kind": "structure", "params": {"type": "model"}, "children": [
{"kind": "component", "params": {"selector": "polymer"}, "children": [
{"kind": "representation", "params": {"type": "cartoon"}, "children": [
{"kind": "color", "params": {"color": "steelblue"}, "custom": {"molstar_color_theme_name": "secondary-structure"}},
{"kind": "focus"}]},
{"kind": "component", "params": {"selector": "ligand"}, "children": [
{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [
{"kind": "color", "params": {"color": "orange"}}]}]}
]}]}]}
]}}}
```res-cftr invalid MVS Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_sourcePrompt: show me the CFTR channel
Mol* validator:
Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_source", "primitives", "primitives_from_uri", "volume", "volume_representation"
{
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/9MXL.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model"
},
"children": [
{
"kind": "component",
"params": {
"selector": "protein"
},
"children": [
{
"kind": "representation",
"params": {
"type": "cartoon"
},
"children": [
{
"kind": "color",
"params": {
"color": "steelblue",
"custom": {
"molstar_color_theme_name": "secondary-structure"
}
}
}
]
}
]
},
{
"kind": "component",
"params": {
"selector": "ligand"
},
"children": [
{
"kind": "representation",
"params": {
"type": "ball_and_stick"
},
"children": [
{
"kind": "color",
"params": {
"color": "orange"
}
}
]
}
]
},
{
"kind": "component",
"params": {
"selector": "ion"
},
"children": [
{
"kind": "representation",
"params": {
"type": "ball_and_stick"
},
"children": [
{
"kind": "color",
"params": {
"color": "purple"
}
}
]
}
]
},
{
"kind": "focus",
"params": {
"radius": 10
}
}
]
}
]
}
]
}
]
}
}res-lysozyme invalid MVS Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_sourcePrompt: Show me hen egg white lysozyme
Mol* validator:
Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_source", "primitives", "primitives_from_uri", "volume", "volume_representation"
{
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/2vb1.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model"
},
"children": [
{
"kind": "component",
"params": {
"selector": "protein"
},
"children": [
{
"kind": "representation",
"params": {
"type": "cartoon"
},
"children": [
{
"kind": "color",
"params": {
"color": "steelblue"
}
}
]
}
]
},
{
"kind": "component",
"params": {
"selector": "ligand"
},
"children": [
{
"kind": "representation",
"params": {
"type": "ball_and_stick"
},
"children": [
{
"kind": "color",
"params": {
"color": "orange"
}
}
]
}
]
},
{
"kind": "focus"
}
]
}
]
}
]
}
]
}
}int-005 invalid JSON JSON parse error: Expecting ',' delimiter: line 17 column 3 (char 812)Prompt: Show trypsin 3PTB as a grey cartoon and display the interactions between the benzamidine inhibitor and the protein.
Parser: JSON parse error: Expecting ',' delimiter: line 17 column 3 (char 812)
{"root": {"kind": "root", "children": [
{"kind": "download", "params": {"url": "https://files.rcsb.org/download/3ptb.cif"},
"children": [
{"kind": "parse", "params": {"format": "mmcif"}, "children": [
{"kind": "structure", "params": {"type": "model"}, "children": [
{"kind": "component", "params": {"selector": "polymer"}, "children": [
{"kind": "representation", "params": {"type": "cartoon"}, "children": [
{"kind": "color", "params": {"color": "gray"}}
]},
{"kind": "component", "params": {"selector": {"auth_asym_id": "A", "label_comp_id": "BEN"}}, "children": [
{"kind": "custom", "params": {"molstar_show_non_covalent_interactions": true, "molstar_non_covalent_interactions_radius_ang": 5}}
]}
]}
]}
]}
]}
]}clinvar-1tup-F109 invalid MVS Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_sourcePrompt: In p53 (PDB 1TUP), chain A, highlight the residue affected by the pathogenic ClinVar variant F109V as red ball-and-stick.
Mol* validator:
Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_source", "primitives", "primitives_from_uri", "volume", "volume_representation"
{
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/1tup.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model"
},
"children": [
{
"kind": "component",
"params": {
"selector": {
"auth_asym_id": "A",
"auth_seq_id": 109
}
},
"children": [
{
"kind": "representation",
"params": {
"type": "ball_and_stick"
},
"children": [
{
"kind": "color",
"params": {
"color": "red"
}
}
]
}
]
},
{
"kind": "component",
"params": {
"selector": "polymer"
},
"children": [
{
"kind": "representation",
"params": {
"type": "cartoon"
},
"children": [
{
"kind": "color",
"params": {
"color": "gray"
}
}
]
}
]
},
{
"kind": "focus",
"params": {
"radius": 5
},
"children": [
{
"kind": "component",
"params": {
"selector": {
"auth_asym_id": "A",
"auth_seq_id": 109
}
}
}
]
}
]
}
]
}
]
}
]
}
}named-1tup-143 invalid MVS Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_sourcePrompt: In p53 (PDB 1TUP), chain A, select the residue at canonical UniProt position 143 and show it as blue ball-and-stick.
Mol* validator:
Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_source", "primitives", "primitives_from_uri", "volume", "volume_representation"
{
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/1tup.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model"
},
"children": [
{
"kind": "component",
"params": {
"selector": {
"auth_asym_id": "A",
"auth_seq_id": 143
}
},
"children": [
{
"kind": "representation",
"params": {
"type": "ball_and_stick"
},
"children": [
{
"kind": "color",
"params": {
"color": "blue"
}
}
]
}
]
},
{
"kind": "focus",
"params": {}
}
]
}
]
}
]
}
]
}
}named-1tup-175 invalid MVS Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_sourcePrompt: In p53 (PDB 1TUP), chain A, select the residue at canonical UniProt position 175 and show it as blue ball-and-stick.
Mol* validator:
Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_source", "primitives", "primitives_from_uri", "volume", "volume_representation"
{
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/1tup.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model"
},
"children": [
{
"kind": "component",
"params": {
"selector": {
"auth_asym_id": "A",
"auth_seq_id": 175
}
},
"children": [
{
"kind": "representation",
"params": {
"type": "ball_and_stick"
},
"children": [
{
"kind": "color",
"params": {
"color": "blue"
}
}
]
}
]
},
{
"kind": "focus",
"params": {}
}
]
}
]
}
]
}
]
}
}gen-focus-1cbs invalid MVS Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_sourcePrompt: Load 1CBS; grey cartoon protein, magenta ball-and-stick ligands, and focus the camera on the ligand.
Mol* validator:
Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_source", "primitives", "primitives_from_uri", "volume", "volume_representation"
{
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/1cbs.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model"
},
"children": [
{
"kind": "component",
"params": {
"selector": "polymer"
},
"children": [
{
"kind": "representation",
"params": {
"type": "cartoon"
},
"children": [
{
"kind": "color",
"params": {
"color": "gray"
}
}
]
}
]
},
{
"kind": "component",
"params": {
"selector": {
"label_comp_id": "REA"
}
},
"children": [
{
"kind": "representation",
"params": {
"type": "ball_and_stick"
},
"children": [
{
"kind": "color",
"params": {
"color": "magenta"
}
}
]
},
{
"kind": "focus"
}
]
},
{
"kind": "focus"
}
]
}
]
}
]
}
]
}
}gen-focus-2hhb invalid MVS Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_sourcePrompt: Load 2HHB; grey cartoon protein, magenta ball-and-stick ligands, and focus the camera on the ligand.
Mol* validator:
Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_source", "primitives", "primitives_from_uri", "volume", "volume_representation"
{
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/2hhb.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model"
},
"children": [
{
"kind": "component",
"params": {
"selector": "polymer"
},
"children": [
{
"kind": "representation",
"params": {
"type": "cartoon"
},
"children": [
{
"kind": "color",
"params": {
"color": "gray"
}
}
]
}
]
},
{
"kind": "component",
"params": {
"selector": "ligand"
},
"children": [
{
"kind": "representation",
"params": {
"type": "ball_and_stick"
},
"children": [
{
"kind": "color",
"params": {
"color": "magenta"
}
}
]
},
{
"kind": "focus"
}
]
},
{
"kind": "focus"
}
]
}
]
}
]
}
]
}
}int-003 invalid MVS Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_sourcePrompt: In trypsin (3PTB), show the protein as a grey cartoon and the catalytic triad (His57, Asp102, Ser195) as ball-and-stick. Draw the two triad hydrogen bonds as dashed lines with their lengths.
Mol* validator:
Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_source", "primitives", "primitives_from_uri", "volume", "volume_representation"
{
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/3ptb.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model"
},
"children": [
{
"kind": "component",
"params": {
"selector": "polymer"
},
"children": [
{
"kind": "representation",
"params": {
"type": "cartoon"
},
"children": [
{
"kind": "color",
"params": {
"color": "grey"
}
}
]
}
]
},
{
"kind": "component",
"params": {
"selector": [
{
"auth_asym_id": "A",
"auth_seq_id": 57
},
{
"auth_asym_id": "A",
"auth_seq_id": 102
},
{
"auth_asym_id": "A",
"auth_seq_id": 195
}
]
},
"children": [
{
"kind": "representation",
"params": {
"type": "ball_and_stick"
},
"children": [
{
"kind": "color",
"params": {
"color": "steelblue"
}
}
]
}
]
},
{
"kind": "primitives",
"params": {
"color": "yellow",
"label_color": "yellow"
},
"children": [
{
"kind": "primitive",
"params": {
"kind": "distance_measurement",
"start": {
"auth_asym_id": "A",
"auth_seq_id": 102,
"label_atom_id": "OD1"
},
"end": {
"auth_asym_id": "A",
"auth_seq_id": 57,
"label_atom_id": "ND1"
},
"radius": 0.06,
"dash_length": 0.15,
"label_template": "{{distance}}"
}
},
{
"kind": "primitive",
"params": {
"kind": "distance_measurement",
"start": {
"auth_asym_id": "A",
"auth_seq_id": 57,
"label_atom_id": "NE2"
},
"end": {
"auth_asym_id": "A",
"auth_seq_id": 195,
"label_atom_id": "OG"
},
"radius": 0.06,
"dash_length": 0.15,
"label_template": "{{distance}}"
}
}
]
},
{
"kind": "focus"
}
]
}
]
}
]
}
]
}
}res-cftr invalid MVS Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_sourcePrompt: show me the CFTR channel
Mol* validator:
Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_source", "primitives", "primitives_from_uri", "volume", "volume_representation"
{
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/9MXL.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model"
},
"children": [
{
"kind": "component",
"params": {
"selector": "protein"
},
"children": [
{
"kind": "representation",
"params": {
"type": "cartoon"
},
"children": [
{
"kind": "color",
"params": {
"color": "lightblue"
}
}
]
}
]
},
{
"kind": "focus",
"params": {}
}
]
}
]
}
]
}
]
}
}res-gfp invalid MVS Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_sourcePrompt: show green fluorescent protein from Aequorea victoria
Mol* validator:
Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_source", "primitives", "primitives_from_uri", "volume", "volume_representation"
{
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/6L27.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model"
},
"children": [
{
"kind": "component",
"params": {
"selector": "polymer"
},
"children": [
{
"kind": "representation",
"params": {
"type": "cartoon"
},
"children": [
{
"kind": "color",
"params": {
"color": "green"
}
}
]
}
]
},
{
"kind": "focus"
}
]
}
]
}
]
}
]
}
}res-lysozyme invalid MVS Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_sourcePrompt: Show me hen egg white lysozyme
Mol* validator:
Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_source", "primitives", "primitives_from_uri", "volume", "volume_representation"
{
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/2vb1.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model"
},
"children": [
{
"kind": "component",
"params": {
"selector": "polymer"
},
"children": [
{
"kind": "representation",
"params": {
"type": "cartoon"
},
"children": [
{
"kind": "color",
"params": {
"color": "steelblue"
}
}
]
}
]
},
{
"kind": "focus"
}
]
}
]
}
]
}
]
}
}res-myoglobin invalid MVS Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_sourcePrompt: Show me sperm whale myoglobin
Mol* validator:
Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_source", "primitives", "primitives_from_uri", "volume", "volume_representation"
{
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/5YCE.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model"
},
"children": [
{
"kind": "component",
"params": {
"selector": "polymer"
},
"children": [
{
"kind": "representation",
"params": {
"type": "cartoon"
},
"children": [
{
"kind": "color",
"params": {
"color": "steelblue"
}
}
]
}
]
},
{
"kind": "component",
"params": {
"selector": "ligand"
},
"children": [
{
"kind": "representation",
"params": {
"type": "ball_and_stick"
},
"children": [
{
"kind": "color",
"params": {
"color": "orange"
}
}
]
}
]
},
{
"kind": "focus"
}
]
}
]
}
]
}
]
}
}res-pde5a invalid MVS Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_sourcePrompt: I wanna see a structure of PDE5A
Mol* validator:
Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_source", "primitives", "primitives_from_uri", "volume", "volume_representation"
{
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/1tbf.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model"
},
"children": [
{
"kind": "component",
"params": {
"selector": "polymer"
},
"children": [
{
"kind": "representation",
"params": {
"type": "cartoon"
},
"children": [
{
"kind": "color",
"params": {
"color": "steelblue"
}
}
]
}
]
},
{
"kind": "component",
"params": {
"selector": "ligand"
},
"children": [
{
"kind": "representation",
"params": {
"type": "ball_and_stick"
},
"children": [
{
"kind": "color",
"params": {
"color": "orange"
}
}
]
}
]
},
{
"kind": "focus"
}
]
}
]
}
]
}
]
}
}clinvar-1tup-D281 invalid JSON JSON parse error: Expecting value: line 8 column 8 (char 433)Prompt: In p53 (PDB 1TUP), chain A, highlight the residue affected by the pathogenic ClinVar variant D281Y as red ball-and-stick.
Parser: JSON parse error: Expecting value: line 8 column 8 (char 433)
```json
{"root": {"kind": "root", "children": [
{"kind": "download", "params": {"url": "https://files.rcsb.org/download/1tup.cif"},
"children": [
{"kind": "parse", "params": {"format": "mmcif"}, "children": [
{"kind": "structure", "params": {"type": "model"}, "children": [
{"kind": "component", "params": {"selector": "polymer"}, "children": [
{"kind": "representation", "params": {"type": "cartoon"}},
]},
{"kind": "component", "params": {"selector": {"auth_asym_id": "A", "auth_seq_id": 281}}, "children": [
{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [
{"kind": "color", "params": {"color": "red"}}]}
]}
]}]}]}
]}}
```clinvar-1tup-F109 invalid JSON JSON parse error: Expecting ',' delimiter: line 11 column 8 (char 699)Prompt: In p53 (PDB 1TUP), chain A, highlight the residue affected by the pathogenic ClinVar variant F109V as red ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 11 column 8 (char 699)
```json
{"root": {"kind": "root", "children": [
{"kind": "download", "params": {"url": "https://files.rcsb.org/download/1tup.cif"},
"children": [
{"kind": "parse", "params": {"format": "mmcif"}, "children": [
{"kind": "structure", "params": {"type": "model"}, "children": [
{"kind": "component", "params": {"selector": "polymer"}, "children": [
{"kind": "representation", "params": {"type": "cartoon"}},
{"kind": "component", "params": {"selector": {"auth_asym_id": "A", "auth_seq_id": 109}}, "children": [
{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [
{"kind": "color", "params": {"color": "red"}}]}]}]
]}
]}]}]}
]}}
```clinvar-1tup-N239 invalid JSON JSON parse error: Expecting ',' delimiter: line 9 column 3 (char 545)Prompt: In p53 (PDB 1TUP), chain A, highlight the residue affected by the pathogenic ClinVar variant N239T as red ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 9 column 3 (char 545)
```json
{"root": {"kind": "root", "children": [
{"kind": "download", "params": {"url": "https://files.rcsb.org/download/1TUP.cif"},
"children": [
{"kind": "parse", "params": {"format": "mmcif"}, "children": [
{"kind": "structure", "params": {"type": "model"}, "children": [
{"kind": "component", "params": {"selector": {"auth_asym_id": "A", "auth_seq_id": 239}}, "children": [
{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [
{"kind": "color", "params": {"color": "red"}}]}]}]}]}
]}}
```clinvar-1tup-S215 invalid JSON JSON parse error: Expecting ',' delimiter: line 12 column 1 (char 706)Prompt: In p53 (PDB 1TUP), chain A, highlight the residue affected by the pathogenic ClinVar variant S215T as red ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 12 column 1 (char 706)
```json
{"root": {"kind": "root", "children": [
{"kind": "download", "params": {"url": "https://files.rcsb.org/download/1tup.cif"},
"children": [
{"kind": "parse", "params": {"format": "mmcif"}, "children": [
{"kind": "structure", "params": {"type": "model"}, "children": [
{"kind": "component", "params": {"selector": "polymer"}, "children": [
{"kind": "representation", "params": {"type": "cartoon"}},
{"kind": "component", "params": {"selector": {"auth_asym_id": "A", "auth_seq_id": 215}}, "children": [
{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [
{"kind": "color", "params": {"color": "red"}}]}]}]}]}
]}]}]}
]}}
```gen-chain-3ptb invalid JSON JSON parse error: Expecting ',' delimiter: line 14 column 3 (char 757)Prompt: Load 3PTB; show everything as a grey cartoon, then colour chain A orange.
Parser: JSON parse error: Expecting ',' delimiter: line 14 column 3 (char 757)
```json
{"root": {"kind": "root", "children": [
{"kind": "download", "params": {"url": "https://files.rcsb.org/download/3ptb.cif"},
"children": [
{"kind": "parse", "params": {"format": "mmcif"}, "children": [
{"kind": "structure", "params": {"type": "model"}, "children": [
{"kind": "component", "params": {"selector": "polymer"}, "children": [
{"kind": "representation", "params": {"type": "cartoon"}, "children": [
{"kind": "color", "params": {"color": "gray"}}]}
]},
{"kind": "component", "params": {"selector": {"auth_asym_id": "A"}}, "children": [
{"kind": "representation", "params": {"type": "cartoon"}, "children": [
{"kind": "color", "params": {"color": "orange"}}]}]}
]}]}
]}}
```gen-chain-4ins invalid JSON JSON parse error: Expecting ',' delimiter: line 15 column 1 (char 771)Prompt: Load 4INS; show everything as a grey cartoon, then colour chain B blue.
Parser: JSON parse error: Expecting ',' delimiter: line 15 column 1 (char 771)
```json
{"root": {"kind": "root", "children": [
{"kind": "download", "params": {"url": "https://files.rcsb.org/download/4ins.cif"},
"children": [
{"kind": "parse", "params": {"format": "mmcif"}, "children": [
{"kind": "structure", "params": {"type": "model"}, "children": [
{"kind": "component", "params": {"selector": "polymer"}, "children": [
{"kind": "representation", "params": {"type": "cartoon"}, "children": [
{"kind": "color", "params": {"color": "gray"}}]}
]}]},
{"kind": "component", "params": {"selector": {"auth_asym_id": "B"}}, "children": [
{"kind": "representation", "params": {"type": "cartoon"}, "children": [
{"kind": "color", "params": {"color": "blue"}}]}
]}
]}]}]}
]}}
```gen-ions-1hho invalid JSON JSON parse error: Expecting ',' delimiter: line 15 column 1 (char 746)Prompt: Load 1HHO; protein as grey cartoon, and show the ions as purple spheres.
Parser: JSON parse error: Expecting ',' delimiter: line 15 column 1 (char 746)
```json
{"root": {"kind": "root", "children": [
{"kind": "download", "params": {"url": "https://files.rcsb.org/download/1hho.cif"},
"children": [
{"kind": "parse", "params": {"format": "mmcif"}, "children": [
{"kind": "structure", "params": {"type": "model"}, "children": [
{"kind": "component", "params": {"selector": "polymer"}, "children": [
{"kind": "representation", "params": {"type": "cartoon"}, "children": [
{"kind": "color", "params": {"color": "gray"}}]}
]},
{"kind": "component", "params": {"selector": "ion"}, "children": [
{"kind": "representation", "params": {"type": "sphere"}, "children": [
{"kind": "color", "params": {"color": "purple"}}]}]}
]}]}
]}]}
]}}
```int-003 invalid JSON JSON parse error: Expecting property name enclosed in double quotes: line 32 column 11 (char 2346)Prompt: In trypsin (3PTB), show the protein as a grey cartoon and the catalytic triad (His57, Asp102, Ser195) as ball-and-stick. Draw the two triad hydrogen bonds as dashed lines with their lengths.
Parser: JSON parse error: Expecting property name enclosed in double quotes: line 32 column 11 (char 2346)
```json
{"root": {"kind": "root", "children": [
{"kind": "download", "params": {"url": "https://files.rcsb.org/download/3ptb.cif"},
"children": [
{"kind": "parse", "params": {"format": "mmcif"}, "children": [
{"kind": "structure", "params": {"type": "model"}, "children": [
{"kind": "component", "params": {"selector": "polymer"}, "children": [
{"kind": "representation", "params": {"type": "cartoon"}, "children": [
{"kind": "color", "params": {"color": "gray"}}]},
{"kind": "component", "params": {"selector": [{"auth_asym_id": "A", "auth_seq_id": 57}]}, "children": [
{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [
{"kind": "color", "params": {"color": "orange"}}]}]},
{"kind": "component", "params": {"selector": [{"auth_asym_id": "A", "auth_seq_id": 102}]}, "children": [
{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [
{"kind": "color", "params": {"color": "orange"}}]}]},
{"kind": "component", "params": {"selector": [{"auth_asym_id": "A", "auth_seq_id": 195}]}, "children": [
{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [
{"kind": "color", "params": {"color": "orange"}}]}]},
{"kind": "component", "params": {"selector": [{"auth_asym_id": "A", "auth_seq_id": 57}, {"auth_asym_id": "A", "auth_seq_id": 102}]}, "children": [
{"kind": "representation", "params": {"type": "line"}, "children": [
{"kind": "color", "params": {"color": "blue"}}]}
]},
{"kind": "component", "params": {"selector": [{"auth_asym_id": "A", "auth_seq_id": 102}, {"auth_asym_id": "A", "auth_seq_id": 195}]}, "children": [
{"kind": "representation", "params": {"type": "line"}, "children": [
{"kind": "color", "params": {"color": "blue"}}]}
]},
{"kind": "primitives", "params": {"color": "yellow", "label_color": "yellow"}, "children": [
{"kind": "primitive", "params": {"kind": "distance_measurement",
"start": {"auth_asym_id": "A", "auth_seq_id": 57, "label_atom_id": "NE2"},
"end": {"auth_asym_id": "A", "auth_seq_id": 102, "label_atom_id": "OD1"},
"radius": 0.06, "dash_length": 0.15, "label_template": "{{distance}}"}}],
["kind": "primitive", "params": {"kind": "distance_measurement",
"start": {"auth_asym_id": "A", "auth_seq_id": 102, "label_atom_id": "OD2"},
"end": {"auth_asym_id": "A", "auth_seq_id": 195, "label_atom_id": "OG"},
"radius": 0.06, "dash_length": 0.15, "label_template": "{{distance}}"}}
]}
]}]}]}
]}}
```res-cftr invalid JSON JSON parse error: Expecting ',' delimiter: line 19 column 3 (char 862)Prompt: show me the CFTR channel
Parser: JSON parse error: Expecting ',' delimiter: line 19 column 3 (char 862)
```json
{"root": {"kind": "root", "children": [
{"kind": "download", "params": {"url": "https://files.rcsb.org/download/9MXL.cif"}, "children": [
{"kind": "parse", "params": {"format": "mmcif"}, "children": [
{"kind": "structure", "params": {"type": "model"}, "children": [
{"kind": "component", "params": {"selector": "polymer"}, "children": [
{"kind": "representation", "params": {"type": "cartoon"}, "children": [
{"kind": "color", "params": {"color": "steelblue"}}
]},
{"kind": "opacity", "params": {"opacity": 0.8}}
]},
{"kind": "component", "params": {"selector": "ligand"}, "children": [
{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [
{"kind": "color", "params": {"color": "orange"}}
]}
]}
]}
]}
]}
]}
```mvs-004 invalid MVS Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_sourcePrompt: Load HIV-1 protease (1HVR); protein as grey cartoon, the bound inhibitor as magenta ball-and-stick, and focus the camera on the inhibitor.
Mol* validator:
Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_source", "primitives", "primitives_from_uri", "volume", "volume_representation"
{
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/1hvr.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model"
},
"children": [
{
"kind": "component",
"params": {
"selector": "polymer"
},
"children": [
{
"kind": "representation",
"params": {
"type": "cartoon"
},
"children": [
{
"kind": "color",
"params": {
"color": "gray"
}
}
]
}
]
},
{
"kind": "component",
"params": {
"selector": {
"auth_asym_id": "A",
"label_comp_id": "XK2"
}
},
"children": [
{
"kind": "representation",
"params": {
"type": "ball_and_stick"
},
"children": [
{
"kind": "color",
"params": {
"color": "magenta"
}
}
]
}
]
},
{
"kind": "focus",
"params": {
"radius": 5
},
"children": [
{
"kind": "component",
"params": {
"selector": {
"auth_asym_id": "A",
"label_comp_id": "XK2"
}
}
}
]
}
]
}
]
}
]
}
]
}
}hotspots-1tup invalid MVS Invalid parameters for node of kind "representation": Invalid value for parameter "type":Prompt: In p53 (PDB 1TUP), chain A, highlight the 6 mutational hotspot residues — the positions carrying the most pathogenic ClinVar variants — as red spheres.
Mol* validator:
Invalid parameters for node of kind "representation":
Invalid value for parameter "type":
"sphere" is not a valid value for literal type ("cartoon" | "backbone" | "ball_and_stick" | "line" | "spacefill" | "carbohydrate" | "surface" | "putty"){
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/1tup.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model"
},
"children": [
{
"kind": "component",
"params": {
"selector": [
{
"auth_asym_id": "A",
"auth_seq_id": 109
}
]
},
"children": [
{
"kind": "representation",
"params": {
"type": "sphere"
},
"children": [
{
"kind": "color",
"params": {
"color": "red"
}
}
]
}
]
},
{
"kind": "component",
"params": {
"selector": [
{
"auth_asym_id": "A",
"auth_seq_id": 110
}
]
},
"children": [
{
"kind": "representation",
"params": {
"type": "sphere"
},
"children": [
{
"kind": "color",
"params": {
"color": "red"
}
}
]
}
]
},
{
"kind": "component",
"params": {
"selector": [
{
"auth_asym_id": "A",
"auth_seq_id": 158
}
]
},
"children": [
{
"kind": "representation",
"params": {
"type": "sphere"
},
"children": [
{
"kind": "color",
"params": {
"color": "red"
}
}
]
}
]
},
{
"kind": "component",
"params": {
"selector": [
{
"auth_asym_id": "A",
"auth_seq_id": 179
}
]
},
"children": [
{
"kind": "representation",
"params": {
"type": "sphere"
},
"children": [
{
"kind": "color",
"params": {
"color": "red"
}
}
]
}
]
},
{
"kind": "component",
"params": {
"selector": [
{
"auth_asym_id": "A",
"auth_seq_id": 215
}
]
},
"children": [
{
"kind": "representation",
"params": {
"type": "sphere"
},
"children": [
{
"kind": "color",
"params": {
"color": "red"
}
}
]
}
]
},
{
"kind": "component",
"params": {
"selector": [
{
"auth_asym_id": "A",
"auth_seq_id": 238
}
]
},
"children": [
{
"kind": "representation",
"params": {
"type": "sphere"
},
"children": [
{
"kind": "color",
"params": {
"color": "red"
}
}
]
}
]
},
{
"kind": "component",
"params": {
"selector": [
{
"auth_asym_id": "A",
"auth_seq_id": 239
}
]
},
"children": [
{
"kind": "representation",
"params": {
"type": "sphere"
},
"children": [
{
"kind": "color",
"params": {
"color": "red"
}
}
]
}
]
},
{
"kind": "component",
"params": {
"selector": [
{
"auth_asym_id": "A",
"auth_seq_id": 240
}
]
},
"children": [
{
"kind": "representation",
"params": {
"type": "sphere"
},
"children": [
{
"kind": "color",
"params": {
"color": "red"
}
}
]
}
]
},
{
"kind": "component",
"params": {
"selector": [
{
"auth_asym_id": "A",
"auth_seq_id": 241
}
]
},
"children": [
{
"kind": "representation",
"params": {
"type": "sphere"
},
"children": [
{
"kind": "color",
"params": {
"color": "red"
}
}
]
}
]
}
]
}
]
}
]
}
]
}
}gen-focus-1cbs invalid MVS Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_sourcePrompt: Load 1CBS; grey cartoon protein, magenta ball-and-stick ligands, and focus the camera on the ligand.
Mol* validator:
Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_source", "primitives", "primitives_from_uri", "volume", "volume_representation"
{
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/1cbs.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model"
},
"children": [
{
"kind": "component",
"params": {
"selector": "polymer"
},
"children": [
{
"kind": "representation",
"params": {
"type": "cartoon"
},
"children": [
{
"kind": "color",
"params": {
"color": "gray"
}
}
]
}
]
},
{
"kind": "component",
"params": {
"selector": "ligand"
},
"children": [
{
"kind": "representation",
"params": {
"type": "ball_and_stick"
},
"children": [
{
"kind": "color",
"params": {
"color": "magenta"
}
}
]
}
]
},
{
"kind": "focus",
"params": {
"radius": 5.0
},
"children": [
{
"kind": "component",
"params": {
"selector": {
"auth_asym_id": "A",
"auth_seq_id": 200
}
}
}
]
}
]
}
]
}
]
}
]
}
}gen-focus-1hho invalid MVS Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_sourcePrompt: Load 1HHO; grey cartoon protein, magenta ball-and-stick ligands, and focus the camera on the ligand.
Mol* validator:
Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_source", "primitives", "primitives_from_uri", "volume", "volume_representation"
{
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/1hho.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model"
},
"children": [
{
"kind": "component",
"params": {
"selector": "polymer"
},
"children": [
{
"kind": "representation",
"params": {
"type": "cartoon"
},
"children": [
{
"kind": "color",
"params": {
"color": "gray"
}
}
]
}
]
},
{
"kind": "component",
"params": {
"selector": "ligand"
},
"children": [
{
"kind": "representation",
"params": {
"type": "ball_and_stick"
},
"children": [
{
"kind": "color",
"params": {
"color": "magenta"
}
}
]
}
]
},
{
"kind": "focus",
"params": {
"radius": 5
}
}
]
}
]
}
]
}
]
}
}gen-focus-2hhb invalid MVS Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_sourcePrompt: Load 2HHB; grey cartoon protein, magenta ball-and-stick ligands, and focus the camera on the ligand.
Mol* validator:
Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_source", "primitives", "primitives_from_uri", "volume", "volume_representation"
{
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/2hhb.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model"
},
"children": [
{
"kind": "component",
"params": {
"selector": "polymer"
},
"children": [
{
"kind": "representation",
"params": {
"type": "cartoon"
},
"children": [
{
"kind": "color",
"params": {
"color": "gray"
}
}
]
}
]
},
{
"kind": "component",
"params": {
"selector": "ligand"
},
"children": [
{
"kind": "representation",
"params": {
"type": "ball_and_stick"
},
"children": [
{
"kind": "color",
"params": {
"color": "magenta"
}
}
]
}
]
},
{
"kind": "focus",
"params": {
"radius": 5
},
"children": [
{
"kind": "component",
"params": {
"selector": {
"auth_asym_id": "A",
"auth_seq_id": 142
}
}
}
]
}
]
}
]
}
]
}
]
}
}gen-focus-3ptb invalid MVS Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_sourcePrompt: Load 3PTB; grey cartoon protein, magenta ball-and-stick ligands, and focus the camera on the ligand.
Mol* validator:
Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_source", "primitives", "primitives_from_uri", "volume", "volume_representation"
{
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/3ptb.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model"
},
"children": [
{
"kind": "component",
"params": {
"selector": "polymer"
},
"children": [
{
"kind": "representation",
"params": {
"type": "cartoon"
},
"children": [
{
"kind": "color",
"params": {
"color": "gray"
}
}
]
}
]
},
{
"kind": "component",
"params": {
"selector": {
"auth_asym_id": "A",
"label_comp_id": "BEN"
}
},
"children": [
{
"kind": "representation",
"params": {
"type": "ball_and_stick"
},
"children": [
{
"kind": "color",
"params": {
"color": "magenta"
}
}
]
}
]
},
{
"kind": "focus",
"params": {
"radius": 5
},
"children": [
{
"kind": "component",
"params": {
"selector": {
"auth_asym_id": "A",
"label_comp_id": "BEN"
}
}
}
]
}
]
}
]
}
]
}
]
}
}gen-ions-2hhb invalid MVS Invalid parameters for node of kind "representation": Invalid value for parameter "type":Prompt: Load 2HHB; protein as grey cartoon, and show the ions as purple spheres.
Mol* validator:
Invalid parameters for node of kind "representation":
Invalid value for parameter "type":
"sphere" is not a valid value for literal type ("cartoon" | "backbone" | "ball_and_stick" | "line" | "spacefill" | "carbohydrate" | "surface" | "putty"){
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/2hhb.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model"
},
"children": [
{
"kind": "component",
"params": {
"selector": "polymer"
},
"children": [
{
"kind": "representation",
"params": {
"type": "cartoon"
},
"children": [
{
"kind": "color",
"params": {
"color": "gray"
}
}
]
}
]
},
{
"kind": "component",
"params": {
"selector": "ion"
},
"children": [
{
"kind": "representation",
"params": {
"type": "sphere"
},
"children": [
{
"kind": "color",
"params": {
"color": "purple"
}
}
]
}
]
}
]
}
]
}
]
}
]
}
}gen-ions-3ptb invalid MVS Invalid parameters for node of kind "representation": Invalid value for parameter "type":Prompt: Load 3PTB; protein as grey cartoon, and show the ions as purple spheres.
Mol* validator:
Invalid parameters for node of kind "representation":
Invalid value for parameter "type":
"sphere" is not a valid value for literal type ("cartoon" | "backbone" | "ball_and_stick" | "line" | "spacefill" | "carbohydrate" | "surface" | "putty"){
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/3ptb.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model"
},
"children": [
{
"kind": "component",
"params": {
"selector": "polymer"
},
"children": [
{
"kind": "representation",
"params": {
"type": "cartoon"
},
"children": [
{
"kind": "color",
"params": {
"color": "gray"
}
}
]
}
]
},
{
"kind": "component",
"params": {
"selector": "ion"
},
"children": [
{
"kind": "representation",
"params": {
"type": "sphere"
},
"children": [
{
"kind": "color",
"params": {
"color": "purple"
}
}
]
}
]
}
]
}
]
}
]
}
]
}
}grd-ligand-4ins-zn invalid MVS Invalid parameters for node of kind "component": Invalid value for parameter "selector":Prompt: Load 4INS; show the protein as a grey cartoon and the ZN as orange ball-and-stick.
Mol* validator:
Invalid parameters for node of kind "component":
Invalid value for parameter "selector":
"nonpolymer" is not a valid value for literal type ("all" | "polymer" | "protein" | "nucleic" | "branched" | "ligand" | "ion" | "water" | "coarse")
Invalid value "nonpolymer" supplied to : (("all" | "polymer" | "protein" | "nucleic" | "branched" | "ligand" | "ion" | "water" | "coarse") | { label_entity_id?: string, label_asym_id?: string, auth_asym_id?: string, label_seq_id?: Integer, auth_seq_id?: Integer, pdbx_PDB_ins_code?: string, beg_label_seq_id?: Integer, end_label_seq_id?: Integer, beg_auth_seq_id?: Integer, end_auth_seq_id?: Integer, label_comp_id?: string, auth_comp_id?: string, residue_index?: Integer, label_atom_id?: string, auth_atom_id?: string, type_symbol?: string, atom_id?: Integer, atom_index?: Integer, instance_id?: string } | Array<{ label_entity_id?: string, label_asym_id?: string, auth_asym_id?: string, label_seq_id?: Integer, auth_seq_id?: Integer, pdbx_PDB_ins_code?: string, beg_label_seq_id?: Integer, end_label_seq_id?: Integer, beg_auth_seq_id?: Integer, end_auth_seq_id?: Integer, label_comp_id?: string, auth_comp_id?: string, residue_index?: Integer, label_atom_id?: string, auth_atom_id?: string, type_symbol?: string, atom_id?: Integer, atom_index?: Integer, instance_id?: string }>)/1: { label_entity_id?: string, label_asym_id?: string, auth_asym_id?: string, label_seq_id?: Integer, auth_seq_id?: Integer, pdbx_PDB_ins_code?: string, beg_label_seq_id?: Integer, end_label_seq_id?: Integer, beg_auth_seq_id?: Integer, end_auth_seq_id?: Integer, label_comp_id?: string, auth_comp_id?: string, residue_index?: Integer, label_atom_id?: string, auth_atom_id?: string, type_symbol?: string, atom_id?: Integer, atom_index?: Integer, instance_id?: string }
Invalid value "nonpolymer" supplied to : (("all" | "polymer" | "protein" | "nucleic" | "branched" | "ligand" | "ion" | "water" | "coarse") | { label_entity_id?: string, label_asym_id?: string, auth_asym_id?: string, label_seq_id?: Integer, auth_seq_id?: Integer, pdbx_PDB_ins_code?: string, beg_label_seq_id?: Integer, end_label_seq_id?: Integer, beg_auth_seq_id?: Integer, end_auth_seq_id?: Integer, label_comp_id?: string, auth_comp_id?: string, residue_index?: Integer, label_atom_id?: string, auth_atom_id?: string, type_symbol?: string, atom_id?: Integer, atom_index?: Integer, instance_id?: string } | Array<{ label_entity_id?: string, label_asym_id?: string, auth_asym_id?: string, label_seq_id?: Integer, auth_seq_id?: Integer, pdbx_PDB_ins_code?: string, beg_label_seq_id?: Integer, end_label_seq_id?: Integer, beg_auth_seq_id?: Integer, end_auth_seq_id?: Integer, label_comp_id?: string, auth_comp_id?: string, residue_index?: Integer, label_atom_id?: string, auth_atom_id?: string, type_symbol?: string, atom_id?: Integer, atom_index?: Integer, instance_id?: string }>)/2: Array<{ label_entity_id?: string, label_asym_id?: string, auth_asym_id?: string, label_seq_id?: Integer, auth_seq_id?: Integer, pdbx_PDB_ins_code?: string, beg_label_seq_id?: Integer, end_label_seq_id?: Integer, beg_auth_seq_id?: Integer, end_auth_seq_id?: Integer, label_comp_id?: string, auth_comp_id?: string, residue_index?: Integer, label_atom_id?: string, auth_atom_id?: string, type_symbol?: string, atom_id?: Integer, atom_index?: Integer, instance_id?: string }>{
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/4ins.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model"
},
"children": [
{
"kind": "component",
"params": {
"selector": "polymer"
},
"children": [
{
"kind": "representation",
"params": {
"type": "cartoon"
},
"children": [
{
"kind": "color",
"params": {
"color": "gray"
}
}
]
}
]
},
{
"kind": "component",
"params": {
"selector": "nonpolymer"
},
"children": [
{
"kind": "representation",
"params": {
"type": "ball_and_stick"
},
"children": [
{
"kind": "color",
"params": {
"color": "orange"
}
}
]
}
]
}
]
}
]
}
]
}
]
}
}int-004 invalid MVS Invalid parameters for node of kind "representation": Missing required parameter "type".Prompt: Load 1A6M with the protein as a grey cartoon and show all the non-covalent interactions (hydrogen bonds, metal contacts) around the bound oxygen molecule.
Mol* validator:
Invalid parameters for node of kind "representation": Missing required parameter "type".
{
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/1a6m.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model"
},
"children": [
{
"kind": "component",
"params": {
"selector": "polymer"
},
"children": [
{
"kind": "representation",
"params": {
"type": "cartoon"
},
"children": [
{
"kind": "color",
"params": {
"color": "gray"
}
}
]
}
]
},
{
"kind": "component",
"params": {
"selector": "ligand"
},
"children": [
{
"kind": "representation",
"params": {
"type": "ball_and_stick"
}
}
]
},
{
"kind": "component",
"params": {
"selector": "water"
},
"children": []
},
{
"kind": "component",
"params": {
"selector": "ligand",
"auth_asym_id": "A",
"label_comp_id": "OXY"
},
"children": [
{
"kind": "representation",
"params": {},
"children": [
{
"kind": "custom",
"params": {
"molstar_show_non_covalent_interactions": true,
"molstar_non_covalent_interactions_radius_ang": 5
}
}
]
}
]
}
]
}
]
}
]
}
]
}
}int-005 invalid MVS Unknown node kind "custom"Prompt: Show trypsin 3PTB as a grey cartoon and display the interactions between the benzamidine inhibitor and the protein.
Mol* validator:
Unknown node kind "custom"
{
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/3ptb.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model"
},
"children": [
{
"kind": "component",
"params": {
"selector": "polymer"
},
"children": [
{
"kind": "representation",
"params": {
"type": "cartoon"
},
"children": [
{
"kind": "color",
"params": {
"color": "gray"
}
}
]
}
]
},
{
"kind": "component",
"params": {
"selector": {
"auth_asym_id": "A",
"auth_comp_id": "BEN"
}
},
"children": [
{
"kind": "representation",
"params": {
"type": "ball_and_stick"
}
}
]
},
{
"kind": "component",
"params": {
"selector": {
"auth_asym_id": "A",
"auth_comp_id": "BEN"
}
},
"children": [
{
"kind": "custom",
"params": {
"molstar_show_non_covalent_interactions": true,
"molstar_non_covalent_interactions_radius_ang": 5
}
}
]
}
]
}
]
}
]
}
]
}
}res-pde5a invalid MVS Node of kind "representation" cannot appear as a child of "structure". Allowed parents for "representation" are: "component", "component_from_uri", "component_fPrompt: I wanna see a structure of PDE5A
Mol* validator:
Node of kind "representation" cannot appear as a child of "structure". Allowed parents for "representation" are: "component", "component_from_uri", "component_from_source"
{
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/1tbf.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model"
},
"children": [
{
"kind": "representation",
"params": {
"type": "cartoon"
},
"children": [
{
"kind": "color",
"params": {
"color": "steelblue"
}
}
]
}
]
},
{
"kind": "component",
"params": {
"selector": "ligand"
},
"children": [
{
"kind": "representation",
"params": {
"type": "ball_and_stick"
},
"children": [
{
"kind": "color",
"params": {
"color": "orange"
}
}
]
}
]
}
]
}
]
}
]
}
}mvs-004 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 675 (char 674)Prompt: Load HIV-1 protease (1HVR); protein as grey cartoon, the bound inhibitor as magenta ball-and-stick, and focus the camera on the inhibitor.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 675 (char 674)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1hvr.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"A","auth_seq_id":263,"auth_comp_id":"XK2"}},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"magenta"}}]},{"kind":"focus"}]}]}]}]}}]}}clinvar-1tup-D281 invalid JSON no JSON object found in outputPrompt: In p53 (PDB 1TUP), chain A, highlight the residue affected by the pathogenic ClinVar variant D281Y as red ball-and-stick.
Parser: no JSON object found in output
The model returned an empty response.
clinvar-1tup-N239 invalid JSON no JSON object found in outputPrompt: In p53 (PDB 1TUP), chain A, highlight the residue affected by the pathogenic ClinVar variant N239T as red ball-and-stick.
Parser: no JSON object found in output
The model returned an empty response.
clinvar-1tup-S215 invalid JSON no JSON object found in outputPrompt: In p53 (PDB 1TUP), chain A, highlight the residue affected by the pathogenic ClinVar variant S215T as red ball-and-stick.
Parser: no JSON object found in output
The model returned an empty response.
clinvar-1tup-S241 invalid JSON no JSON object found in outputPrompt: In p53 (PDB 1TUP), chain A, highlight the residue affected by the pathogenic ClinVar variant S241Y as red ball-and-stick.
Parser: no JSON object found in output
The model returned an empty response.
gen-chain-1cbs invalid JSON no JSON object found in outputPrompt: Load 1CBS; show everything as a grey cartoon, then colour chain A purple.
Parser: no JSON object found in output
The model returned an empty response.
gen-chain-1lyz invalid JSON no JSON object found in outputPrompt: Load 1LYZ; show everything as a grey cartoon, then colour chain A green.
Parser: no JSON object found in output
The model returned an empty response.
gen-chain-3ptb invalid JSON no JSON object found in outputPrompt: Load 3PTB; show everything as a grey cartoon, then colour chain A orange.
Parser: no JSON object found in output
The model returned an empty response.
gen-chain-4ins invalid JSON no JSON object found in outputPrompt: Load 4INS; show everything as a grey cartoon, then colour chain B blue.
Parser: no JSON object found in output
The model returned an empty response.
gen-focus-3ptb invalid JSON no JSON object found in outputPrompt: Load 3PTB; grey cartoon protein, magenta ball-and-stick ligands, and focus the camera on the ligand.
Parser: no JSON object found in output
The model returned an empty response.
gen-ligands-2hhb invalid JSON no JSON object found in outputPrompt: Load 2HHB; show the protein as a grey cartoon and the ligands as teal ball-and-stick.
Parser: no JSON object found in output
The model returned an empty response.
gen-ligands-3ptb invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 661 (char 660)Prompt: Load 3PTB; show the protein as a grey cartoon and the ligands as orange ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 661 (char 660)
{"root": {"kind": "root", "children": [{"kind": "download", "params": {"url": "https://files.rcsb.org/download/3ptb.cif"}, "children": [{"kind": "parse", "params": {"format": "mmcif"}, "children": [{"kind": "structure", "params": {"type": "model"}, "children": [{"kind": "component", "params": {"selector": "protein"}, "children": [{"kind": "representation", "params": {"type": "cartoon"}, "children": [{"kind": "color", "params": {"color": "gray"}}]}]}, {"kind": "component", "params": {"selector": "ligand"}, "children": [{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [{"kind": "color", "params": {"color": "orange"}}]}]}]}]}]}}]}}gen-range-1cbs invalid JSON JSON parse error: Expecting ',' delimiter: line 15 column 9 (char 842)Prompt: Load 1CBS; protein as grey cartoon, and show residues 20-60 of chain A as orange ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 15 column 9 (char 842)
{"root": {"kind": "root", "children": [
{"kind": "download", "params": {"url": "https://files.rcsb.org/download/1cbs.cif"}, "children": [
{"kind": "parse", "params": {"format": "mmcif"}, "children": [
{"kind": "structure", "params": {"type": "model"}, "children": [
{"kind": "component", "params": {"selector": "polymer"}, "children": [
{"kind": "representation", "params": {"type": "cartoon"}, "children": [
{"kind": "color", "params": {"color": "gray"}}
]}
]},
{"kind": "component", "params": {"selector": {"auth_asym_id": "A", "beg_auth_seq_id": 20, "end_auth_seq_id": 60}}, "children": [
{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [
{"kind": "color", "params": {"color": "orange"}}
]}
]}
]}}
]}
]}}
]}}gen-range-1lyz invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 720 (char 719)Prompt: Load 1LYZ; protein as grey cartoon, and show residues 40-80 of chain A as orange ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 720 (char 719)
{"root": {"kind": "root", "children": [{"kind": "download", "params": {"url": "https://files.rcsb.org/download/1lyz.cif"}, "children": [{"kind": "parse", "params": {"format": "mmcif"}, "children": [{"kind": "structure", "params": {"type": "model"}, "children": [{"kind": "component", "params": {"selector": "polymer"}, "children": [{"kind": "representation", "params": {"type": "cartoon"}, "children": [{"kind": "color", "params": {"color": "gray"}}]}]}, {"kind": "component", "params": {"selector": {"auth_asym_id": "A", "beg_auth_seq_id": 40, "end_auth_seq_id": 80}}, "children": [{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [{"kind": "color", "params": {"color": "orange"}}]}]}]}]}]}}]}}gen-range-3ptb invalid JSON no JSON object found in outputPrompt: Load 3PTB; protein as grey cartoon, and show residues 50-110 of chain A as orange ball-and-stick.
Parser: no JSON object found in output
The model returned an empty response.
grd-disulfide-1lyz invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 990 (char 989)Prompt: Load 1LYZ; protein as grey cartoon, and highlight the disulfide-bonded cysteines as yellow ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 990 (char 989)
{"root": {"kind": "root", "children": [{"kind": "download", "params": {"url": "https://files.rcsb.org/download/1lyz.cif"}, "children": [{"kind": "parse", "params": {"format": "mmcif"}, "children": [{"kind": "structure", "params": {"type": "model"}, "children": [{"kind": "component", "params": {"selector": "polymer"}, "children": [{"kind": "representation", "params": {"type": "cartoon"}, "children": [{"kind": "color", "params": {"color": "gray"}}]}]}, {"kind": "component", "params": {"selector": [{"auth_asym_id": "A", "auth_seq_id": 6}, {"auth_asym_id": "A", "auth_seq_id": 30}, {"auth_asym_id": "A", "auth_seq_id": 64}, {"auth_asym_id": "A", "auth_seq_id": 76}, {"auth_asym_id": "A", "auth_seq_id": 80}, {"auth_asym_id": "A", "auth_seq_id": 94}, {"auth_asym_id": "A", "auth_seq_id": 115}, {"auth_asym_id": "A", "auth_seq_id": 127}]}, "children": [{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [{"kind": "color", "params": {"color": "yellow"}}]}]}]}]}]}}]}}grd-disulfide-3ptb invalid JSON no JSON object found in outputPrompt: Load 3PTB; protein as grey cartoon, and highlight the disulfide-bonded cysteines as yellow ball-and-stick.
Parser: no JSON object found in output
The model returned an empty response.
grd-ligand-1cbs-rea invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 694 (char 693)Prompt: Load 1CBS; show the protein as a grey cartoon and the REA as orange ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 694 (char 693)
{"root": {"kind": "root", "children": [{"kind": "download", "params": {"url": "https://files.rcsb.org/download/1cbs.cif"}, "children": [{"kind": "parse", "params": {"format": "mmcif"}, "children": [{"kind": "structure", "params": {"type": "model"}, "children": [{"kind": "component", "params": {"selector": "polymer"}, "children": [{"kind": "representation", "params": {"type": "cartoon"}, "children": [{"kind": "color", "params": {"color": "gray"}}]}]}, {"kind": "component", "params": {"selector": {"auth_asym_id": "A", "auth_seq_id": 200}}, "children": [{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [{"kind": "color", "params": {"color": "orange"}}]}]}]}]}]}}]}grd-ligand-2hhb-hem invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 677 (char 676)Prompt: Load 2HHB; show the protein as a grey cartoon and the HEM as orange ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 677 (char 676)
{"root": {"kind": "root", "children": [{"kind": "download", "params": {"url": "https://files.rcsb.org/download/2hhb.cif"}, "children": [{"kind": "parse", "params": {"format": "mmcif"}, "children": [{"kind": "structure", "params": {"type": "model"}, "children": [{"kind": "component", "params": {"selector": "protein"}, "children": [{"kind": "representation", "params": {"type": "cartoon"}, "children": [{"kind": "color", "params": {"color": "gray"}}]}]}, {"kind": "component", "params": {"selector": {"label_comp_id": "HEM"}}, "children": [{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [{"kind": "color", "params": {"color": "orange"}}]}]}]}]}]}}]}}int-001 invalid JSON no JSON object found in outputPrompt: In oxymyoglobin 1A6M, show the protein as a grey cartoon, His64 and the bound O2 as ball-and-stick, and draw the hydrogen bond from His64 NE2 to the O2 molecule's terminal oxygen (atom O2) as a dashed line labelled with its length.
Parser: no JSON object found in output
The model returned an empty response.
int-002 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 184 (char 183)Prompt: Load 1A6M with the protein as a grey cartoon. Show the heme and the proximal histidine as ball-and-stick and measure the distance from the heme iron to the histidine's coordinating nitrogen.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 184 (char 183)
{"root": {"kind": "root", "children": [{"kind": "download", "params": {"url": "https://files.rcsb.org/download/1a6m.cif"}, "children": [{"kind": "parse", "params": {"format": "mmcif"}, "childrenint-003 invalid JSON no JSON object found in outputPrompt: In trypsin (3PTB), show the protein as a grey cartoon and the catalytic triad (His57, Asp102, Ser195) as ball-and-stick. Draw the two triad hydrogen bonds as dashed lines with their lengths.
Parser: no JSON object found in output
The model returned an empty response.
int-004 invalid JSON no JSON object found in outputPrompt: Load 1A6M with the protein as a grey cartoon and show all the non-covalent interactions (hydrogen bonds, metal contacts) around the bound oxygen molecule.
Parser: no JSON object found in output
The model returned an empty response.
int-005 invalid JSON no JSON object found in outputPrompt: Show trypsin 3PTB as a grey cartoon and display the interactions between the benzamidine inhibitor and the protein.
Parser: no JSON object found in output
The model returned an empty response.
res-pcsk9 invalid MVS Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_sourcePrompt: show the structure of PCSK9
Mol* validator:
Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_source", "primitives", "primitives_from_uri", "volume", "volume_representation"
{
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/7s5h.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model"
},
"children": [
{
"kind": "component",
"params": {
"selector": "protein"
},
"children": [
{
"kind": "representation",
"params": {
"type": "cartoon"
},
"children": [
{
"kind": "color",
"params": {
"color": "lightblue"
}
}
]
}
]
},
{
"kind": "component",
"params": {
"selector": "ligand"
},
"children": [
{
"kind": "representation",
"params": {
"type": "ball_and_stick"
},
"children": [
{
"kind": "color",
"params": {
"color": "orange"
}
}
]
}
]
},
{
"kind": "component",
"params": {
"selector": "ion"
},
"children": [
{
"kind": "representation",
"params": {
"type": "ball_and_stick"
},
"children": [
{
"kind": "color",
"params": {
"color": "green"
}
}
]
}
]
},
{
"kind": "focus",
"params": {}
}
]
}
]
}
]
}
]
}
}clinvar-1tup-S215 invalid JSON JSON parse error: Extra data: line 1 column 544 (char 543)Prompt: In p53 (PDB 1TUP), chain A, highlight the residue affected by the pathogenic ClinVar variant S215T as red ball-and-stick.
Parser: JSON parse error: Extra data: line 1 column 544 (char 543)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1tup.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":{"auth_asym_id":"A","auth_seq_id":215}},"children":[{"kind":"representation","params":{"type":"ball_and_stick","size_factor":1},"children":[{"kind":"color","params":{"color":"red"},"focus":{"radius":6},"label":{"text":"p53 S215T (ClinVar) — A:215"}}]}]}]}]}]}]}}}gen-cartoon-1cbs invalid JSON JSON parse error: Extra data: line 1 column 508 (char 507)Prompt: Load cellular retinoic-acid binding protein (1CBS) and show the protein as a purple cartoon.
Parser: JSON parse error: Extra data: line 1 column 508 (char 507)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1cbs.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model","model_index":0},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon","size_factor":1},"children":[{"kind":"color","params":{"color":"purple","custom":{"molstar_color_theme_name":"chain-id"}}}]}]}]}]}]}]}}}gen-cartoon-1hho invalid JSON JSON parse error: Extra data: line 1 column 456 (char 455)Prompt: Load haemoglobin (1HHO) and show the protein as a red cartoon.
Parser: JSON parse error: Extra data: line 1 column 456 (char 455)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1HHO.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model","model_index":0},"children":[{"kind":"component","params":{"selector":"protein"},"children":[{"kind":"representation","params":{"type":"cartoon","size_factor":1},"children":[{"kind":"color","params":{"color":"red"}}]}]}]}]}]}]}}}gen-chain-1cbs invalid JSON JSON parse error: Extra data: line 1 column 707 (char 706)Prompt: Load 1CBS; show everything as a grey cartoon, then colour chain A purple.
Parser: JSON parse error: Extra data: line 1 column 707 (char 706)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1cbs.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model","model_index":0},"children":[{"kind":"component","params":{"selector":"all"},"children":[{"kind":"representation","params":{"type":"cartoon","size_factor":1},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"A"}},"children":[{"kind":"representation","params":{"type":"cartoon","size_factor":1},"children":[{"kind":"color","params":{"color":"purple"},"custom":{"molstar_color_theme_name":"chain-id"}}]}]}]}]}]}]}}}gen-ions-3ptb invalid JSON JSON parse error: Extra data: line 1 column 687 (char 686)Prompt: Load 3PTB; protein as grey cartoon, and show the ions as purple spheres.
Parser: JSON parse error: Extra data: line 1 column 687 (char 686)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/3ptb.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model","model_index":0},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon","size_factor":1},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"A","auth_seq_id":480}},"children":[{"kind":"representation","params":{"type":"ball_and_stick","size_factor":1},"children":[{"kind":"color","params":{"color":"purple"}}]}]}]}]}]}]}}}gen-range-1cbs invalid JSON JSON parse error: Extra data: line 1 column 695 (char 694)Prompt: Load 1CBS; protein as grey cartoon, and show residues 20-60 of chain A as orange ball-and-stick.
Parser: JSON parse error: Extra data: line 1 column 695 (char 694)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1cbs.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model","model_index":0},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"A","beg_auth_seq_id":20,"end_auth_seq_id":60}},"children":[{"kind":"representation","params":{"type":"ball_and_stick","size_factor":1},"children":[{"kind":"color","params":{"color":"orange"}}]}]}]}]}]}]}}}gen-surface-4ins invalid JSON JSON parse error: Extra data: line 1 column 702 (char 701)Prompt: Load 4INS; render the protein as a salmon molecular surface.
Parser: JSON parse error: Extra data: line 1 column 702 (char 701)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/4ins.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model","model_index":0},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"surface","size_factor":1},"children":[{"kind":"color","params":{"color":"salmon"}}]}]},{"kind":"component","params":{"selector":"polymer","custom":{"molstar_color_theme_name":"chain-id"}},"children":[{"kind":"representation","params":{"type":"surface","size_factor":1},"children":[{"kind":"color","params":{"color":"salmon"}}]}]}]}]}]}]}}}grd-disulfide-1lyz invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 879 (char 878)Prompt: Load 1LYZ; protein as grey cartoon, and highlight the disulfide-bonded cysteines as yellow ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 879 (char 878)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1lyz.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model","model_index":0},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon","size_factor":1},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":[{"auth_asym_id":"A","auth_seq_id":6},{"auth_asym_id":"A","auth_seq_id":127},{"auth_asym_id":"A","auth_seq_id":30},{"auth_asym_id":"A","auth_seq_id":115},{"auth_asym_id":"A","auth_seq_id":42},{"auth_asym_id":"A","auth_seq_id":103}]},"children":[{"kind":"representation","params":{"type":"ball_and_stick","size_factor":1},"children":[{"kind":"color","params":{"color":"yellow"}}]}]}]}]}]}]}]}}grd-disulfide-3ptb invalid JSON JSON parse error: Extra data: line 1 column 791 (char 790)Prompt: Load 3PTB; protein as grey cartoon, and highlight the disulfide-bonded cysteines as yellow ball-and-stick.
Parser: JSON parse error: Extra data: line 1 column 791 (char 790)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/3ptb.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model","model_index":0},"children":[{"kind":"component","params":{"selector":"protein"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":[{"auth_asym_id":"A","auth_seq_id":56},{"auth_asym_id":"A","auth_seq_id":114},{"auth_asym_id":"A","auth_seq_id":187},{"auth_asym_id":"A","auth_seq_id":189}]},"children":[{"kind":"representation","params":{"type":"ball_and_stick","size_factor":1.0},"children":[{"kind":"color","params":{"color":"yellow"}}]}]}]}]}]}]}}}int-001 invalid JSON JSON parse error: Extra data: line 1 column 1324 (char 1323)Prompt: In oxymyoglobin 1A6M, show the protein as a grey cartoon, His64 and the bound O2 as ball-and-stick, and draw the hydrogen bond from His64 NE2 to the O2 molecule's terminal oxygen (atom O2) as a dashed line labelled with its length.
Parser: JSON parse error: Extra data: line 1 column 1324 (char 1323)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1A6M.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model","model_index":0},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon","size_factor":1},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"A","auth_seq_id":64}},"children":[{"kind":"representation","params":{"type":"ball_and_stick","size_factor":1},"children":[{"kind":"color","params":{"color":"orange"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"A","auth_seq_id":157,"auth_comp_id":"OXY"}},"children":[{"kind":"representation","params":{"type":"ball_and_stick","size_factor":1},"children":[{"kind":"color","params":{"color":"red"}}]}]},{"kind":"primitives","params":{"color":"yellow","label_color":"yellow"},"children":[{"kind":"primitive","params":{"kind":"distance_measurement","start":{"auth_asym_id":"A","auth_seq_id":64,"auth_comp_id":"HIS","label_atom_id":"NE2"},"end":{"auth_asym_id":"A","auth_seq_id":157,"label_comp_id":"OXY","label_atom_id":"O2"},"radius":0.06,"dash_length":0.15,"label_template":"{{distance}}"}}]}]}]}]}]}}}int-002 invalid JSON JSON parse error: Extra data: line 1 column 1331 (char 1330)Prompt: Load 1A6M with the protein as a grey cartoon. Show the heme and the proximal histidine as ball-and-stick and measure the distance from the heme iron to the histidine's coordinating nitrogen.
Parser: JSON parse error: Extra data: line 1 column 1331 (char 1330)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1a6m.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model","model_index":0},"children":[{"kind":"component","params":{"selector":"protein"},"children":[{"kind":"representation","params":{"type":"cartoon","size_factor":1},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"A","label_comp_id":"HEM"}},"children":[{"kind":"representation","params":{"type":"ball_and_stick","size_factor":1},"children":[{"kind":"color","params":{"color":"orange"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"A","auth_seq_id":64,"label_comp_id":"HIS"}},"children":[{"kind":"representation","params":{"type":"ball_and_stick","size_factor":1},"children":[{"kind":"color","params":{"color":"yellow"}}]}]},{"kind":"primitives","params":{"color":"white","label_color":"white"},"children":[{"kind":"primitive","params":{"kind":"distance_measurement","start":{"auth_asym_id":"A","auth_seq_id":154,"label_comp_id":"HEM","label_atom_id":"FE"},"end":{"auth_asym_id":"A","auth_seq_id":64,"label_comp_id":"HIS","label_atom_id":"NE2"},"radius":0.06,"dash_length":0.15,"label_template":"{{distance}}"}}]}]}]}]}]}}]}res-myoglobin invalid JSON JSON parse error: Extra data: line 1 column 958 (char 957)Prompt: Show me sperm whale myoglobin
Parser: JSON parse error: Extra data: line 1 column 958 (char 957)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/5yce.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model","model_index":0},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon","size_factor":1},"children":[{"kind":"color","params":{"color":"slategray"}}]}]},{"kind":"component","params":{"selector":{"auth_comp_id":"HEM"}},"children":[{"kind":"representation","params":{"type":"ball_and_stick","size_factor":1},"children":[{"kind":"color","params":{"color":"orange"}}]}]},{"kind":"component","params":{"selector":{"auth_comp_id":"HEM","auth_asym_id":"A"}},"children":[{"kind":"focus","params":{"radius":6}}]},{"kind":"component","params":{"selector":{"auth_asym_id":"A","auth_seq_id":35}},"children":[{"kind":"label","params":{"text":"Heme vicinity"}}]}]}]}]}]}}}clinvar-1tup-N239 invalid MVS Node of kind "focus" cannot appear as a child of "color". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_source", "Prompt: In p53 (PDB 1TUP), chain A, highlight the residue affected by the pathogenic ClinVar variant N239T as red ball-and-stick.
Mol* validator:
Node of kind "focus" cannot appear as a child of "color". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_source", "primitives", "primitives_from_uri", "volume", "volume_representation"
{
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/1tup.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model"
},
"children": [
{
"kind": "component",
"params": {
"selector": {
"auth_asym_id": "A",
"auth_seq_id": 239
}
},
"children": [
{
"kind": "representation",
"params": {
"type": "ball_and_stick"
},
"children": [
{
"kind": "color",
"params": {
"color": "red"
},
"children": [
{
"kind": "focus",
"params": {
"radius": 5
}
},
{
"kind": "label",
"params": {
"text": "N239T (ClinVar)",
"label_size": 0.8
}
}
]
}
]
}
]
}
]
}
]
}
]
}
]
}
}named-1tup-143 invalid MVS Node of kind "focus" cannot appear as a child of "color". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_source", "Prompt: In p53 (PDB 1TUP), chain A, select the residue at canonical UniProt position 143 and show it as blue ball-and-stick.
Mol* validator:
Node of kind "focus" cannot appear as a child of "color". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_source", "primitives", "primitives_from_uri", "volume", "volume_representation"
{
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/1tup.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model"
},
"children": [
{
"kind": "component",
"params": {
"selector": {
"auth_asym_id": "A",
"auth_seq_id": 143
}
},
"children": [
{
"kind": "representation",
"params": {
"type": "ball_and_stick",
"size_factor": 1
},
"children": [
{
"kind": "color",
"params": {
"color": "blue"
},
"children": [
{
"kind": "focus",
"params": {
"radius": 6
}
}
]
},
{
"kind": "label",
"params": {
"text": "p53 Val143",
"label_size": 0.8
}
}
]
}
]
}
]
}
]
}
]
}
]
}
}named-1tup-175 invalid MVS Node of kind "focus" cannot appear as a child of "representation". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_sPrompt: In p53 (PDB 1TUP), chain A, select the residue at canonical UniProt position 175 and show it as blue ball-and-stick.
Mol* validator:
Node of kind "focus" cannot appear as a child of "representation". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_source", "primitives", "primitives_from_uri", "volume", "volume_representation"
{
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/1tup.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model",
"model_index": 0
},
"children": [
{
"kind": "component",
"params": {
"selector": {
"auth_asym_id": "A",
"auth_seq_id": 175
}
},
"children": [
{
"kind": "representation",
"params": {
"type": "ball_and_stick",
"size_factor": 1
},
"children": [
{
"kind": "color",
"params": {
"color": "blue"
},
"custom": {}
},
{
"kind": "focus",
"params": {
"radius": 6
}
}
]
},
{
"kind": "label",
"params": {
"text": "p53 Arg175 (P04637)",
"label_size": 0.8
}
}
]
}
]
}
]
}
]
}
]
}
}gen-focus-1hho invalid MVS Invalid parameters for node of kind "component": Invalid value for parameter "selector":Prompt: Load 1HHO; grey cartoon protein, magenta ball-and-stick ligands, and focus the camera on the ligand.
Mol* validator:
Invalid parameters for node of kind "component":
Invalid value for parameter "selector":
"nonpolymer" is not a valid value for literal type ("all" | "polymer" | "protein" | "nucleic" | "branched" | "ligand" | "ion" | "water" | "coarse")
Invalid value "nonpolymer" supplied to : (("all" | "polymer" | "protein" | "nucleic" | "branched" | "ligand" | "ion" | "water" | "coarse") | { label_entity_id?: string, label_asym_id?: string, auth_asym_id?: string, label_seq_id?: Integer, auth_seq_id?: Integer, pdbx_PDB_ins_code?: string, beg_label_seq_id?: Integer, end_label_seq_id?: Integer, beg_auth_seq_id?: Integer, end_auth_seq_id?: Integer, label_comp_id?: string, auth_comp_id?: string, residue_index?: Integer, label_atom_id?: string, auth_atom_id?: string, type_symbol?: string, atom_id?: Integer, atom_index?: Integer, instance_id?: string } | Array<{ label_entity_id?: string, label_asym_id?: string, auth_asym_id?: string, label_seq_id?: Integer, auth_seq_id?: Integer, pdbx_PDB_ins_code?: string, beg_label_seq_id?: Integer, end_label_seq_id?: Integer, beg_auth_seq_id?: Integer, end_auth_seq_id?: Integer, label_comp_id?: string, auth_comp_id?: string, residue_index?: Integer, label_atom_id?: string, auth_atom_id?: string, type_symbol?: string, atom_id?: Integer, atom_index?: Integer, instance_id?: string }>)/1: { label_entity_id?: string, label_asym_id?: string, auth_asym_id?: string, label_seq_id?: Integer, auth_seq_id?: Integer, pdbx_PDB_ins_code?: string, beg_label_seq_id?: Integer, end_label_seq_id?: Integer, beg_auth_seq_id?: Integer, end_auth_seq_id?: Integer, label_comp_id?: string, auth_comp_id?: string, residue_index?: Integer, label_atom_id?: string, auth_atom_id?: string, type_symbol?: string, atom_id?: Integer, atom_index?: Integer, instance_id?: string }
Invalid value "nonpolymer" supplied to : (("all" | "polymer" | "protein" | "nucleic" | "branched" | "ligand" | "ion" | "water" | "coarse") | { label_entity_id?: string, label_asym_id?: string, auth_asym_id?: string, label_seq_id?: Integer, auth_seq_id?: Integer, pdbx_PDB_ins_code?: string, beg_label_seq_id?: Integer, end_label_seq_id?: Integer, beg_auth_seq_id?: Integer, end_auth_seq_id?: Integer, label_comp_id?: string, auth_comp_id?: string, residue_index?: Integer, label_atom_id?: string, auth_atom_id?: string, type_symbol?: string, atom_id?: Integer, atom_index?: Integer, instance_id?: string } | Array<{ label_entity_id?: string, label_asym_id?: string, auth_asym_id?: string, label_seq_id?: Integer, auth_seq_id?: Integer, pdbx_PDB_ins_code?: string, beg_label_seq_id?: Integer, end_label_seq_id?: Integer, beg_auth_seq_id?: Integer, end_auth_seq_id?: Integer, label_comp_id?: string, auth_comp_id?: string, residue_index?: Integer, label_atom_id?: string, auth_atom_id?: string, type_symbol?: string, atom_id?: Integer, atom_index?: Integer, instance_id?: string }>)/2: Array<{ label_entity_id?: string, label_asym_id?: string, auth_asym_id?: string, label_seq_id?: Integer, auth_seq_id?: Integer, pdbx_PDB_ins_code?: string, beg_label_seq_id?: Integer, end_label_seq_id?: Integer, beg_auth_seq_id?: Integer, end_auth_seq_id?: Integer, label_comp_id?: string, auth_comp_id?: string, residue_index?: Integer, label_atom_id?: string, auth_atom_id?: string, type_symbol?: string, atom_id?: Integer, atom_index?: Integer, instance_id?: string }>{
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/1hho.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model",
"model_index": 0
},
"children": [
{
"kind": "component",
"params": {
"selector": "polymer"
},
"children": [
{
"kind": "representation",
"params": {
"type": "cartoon",
"size_factor": 1
},
"children": [
{
"kind": "color",
"params": {
"color": "gray"
}
}
]
}
]
},
{
"kind": "component",
"params": {
"selector": "nonpolymer"
},
"children": [
{
"kind": "representation",
"params": {
"type": "ball_and_stick",
"size_factor": 1
},
"children": [
{
"kind": "color",
"params": {
"color": "magenta"
}
}
]
}
]
},
{
"kind": "component",
"params": {
"selector": [
{
"auth_asym_id": "A",
"auth_seq_id": 150
},
{
"auth_asym_id": "B",
"auth_seq_id": 150
}
]
},
"children": [
{
"kind": "focus",
"params": {
"radius": 6
}
}
]
}
]
}
]
}
]
}
]
}
}int-006 invalid MVS Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_sourcePrompt: Load haemoglobin 1HHO; show the protein as a 50% transparent surface and the heme groups as ball-and-stick.
Mol* validator:
Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_source", "primitives", "primitives_from_uri", "volume", "volume_representation"
{
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/1hho.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model",
"model_index": 0
},
"children": [
{
"kind": "component",
"params": {
"selector": "polymer"
},
"children": [
{
"kind": "representation",
"params": {
"type": "surface",
"size_factor": 1
},
"children": [
{
"kind": "color",
"params": {
"color": "lightgray"
}
},
{
"kind": "opacity",
"params": {
"opacity": 0.5
}
}
]
}
]
},
{
"kind": "component",
"params": {
"selector": [
{
"auth_asym_id": "A",
"auth_comp_id": "HEM"
},
{
"auth_asym_id": "B",
"auth_comp_id": "HEM"
}
]
},
"children": [
{
"kind": "representation",
"params": {
"type": "ball_and_stick",
"size_factor": 1.2
},
"children": [
{
"kind": "color",
"params": {
"color": "orange"
}
}
]
}
]
},
{
"kind": "focus",
"params": {
"radius": 35
}
}
]
}
]
}
]
}
]
}
}clinvar-1tup-S241 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 657 (char 656)Prompt: In p53 (PDB 1TUP), chain A, highlight the residue affected by the pathogenic ClinVar variant S241Y as red ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 657 (char 656)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1tup.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":{"auth_asym_id":"A"}},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"A","auth_seq_id":241}},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"red"}}]},{"kind":"focus"}]}]}}]}]}}named-1tup-143 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 494 (char 493)Prompt: In p53 (PDB 1TUP), chain A, select the residue at canonical UniProt position 143 and show it as blue ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 494 (char 493)
{"root": {"kind": "root", "children": [{"kind": "download", "params": {"url": "https://files.rcsb.org/download/1tup.cif"}, "children": [{"kind": "parse", "params": {"format": "mmcif"}, "children": [{"kind": "structure", "params": {"type": "model"}, "children": [{"kind": "component", "params": {"selector": {"auth_asym_id": "A", "auth_seq_id": 143}},"children": [{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [{"kind": "color", "params": {"color": "blue"}}]}]}]}}]}]}]}}gen-cartoon-1lyz invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 423 (char 422)Prompt: Load lysozyme (1LYZ) and show the protein as a green cartoon.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 423 (char 422)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1lyz.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"green"}}]}]}]}]}]}}]}}gen-chain-1cbs invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 607 (char 606)Prompt: Load 1CBS; show everything as a grey cartoon, then colour chain A purple.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 607 (char 606)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1cbs.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"A"}},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"purple"}}]}]}]}}]}]}}gen-chain-2hhb invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 609 (char 608)Prompt: Load 2HHB; show everything as a grey cartoon, then colour chain B teal.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 609 (char 608)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/2hhb.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"B"}},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"teal"}}]}]}]}]}]}}}gen-focus-1cbs invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 650 (char 649)Prompt: Load 1CBS; grey cartoon protein, magenta ball-and-stick ligands, and focus the camera on the ligand.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 650 (char 649)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1cbs.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"A","auth_seq_id":200}},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"magenta"}}]},{"kind":"focus"}]}]}}]}]}}gen-ions-2hhb invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 598 (char 597)Prompt: Load 2HHB; protein as grey cartoon, and show the ions as purple spheres.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 598 (char 597)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/2hhb.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":"ion"},"children":[{"kind":"representation","params":{"type":"spacefill"},"children":[{"kind":"color","params":{"color":"purple"}}]}]}]}]}]}}gen-ligands-1cbs invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 636 (char 635)Prompt: Load 1CBS; show the protein as a grey cartoon and the ligands as purple ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 636 (char 635)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1cbs.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"A","auth_seq_id":200}},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"purple"}}]}]}]}]}]}}gen-range-1cbs invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 656 (char 655)Prompt: Load 1CBS; protein as grey cartoon, and show residues 20-60 of chain A as orange ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 656 (char 655)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1cbs.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"A","beg_auth_seq_id":20,"end_auth_seq_id":60}},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"orange"}}]}]}]}}]}]}}gen-range-1hho invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 656 (char 655)Prompt: Load 1HHO; protein as grey cartoon, and show residues 30-90 of chain A as orange ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 656 (char 655)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1hho.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"A","beg_auth_seq_id":30,"end_auth_seq_id":90}},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"orange"}}]}]}]}}]}]}}gen-range-2hhb invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 656 (char 655)Prompt: Load 2HHB; protein as grey cartoon, and show residues 10-70 of chain B as orange ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 656 (char 655)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/2hhb.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"B","beg_auth_seq_id":10,"end_auth_seq_id":70}},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"orange"}}]}]}]}}]}}]}}gen-range-4ins invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 655 (char 654)Prompt: Load 4INS; protein as grey cartoon, and show residues 5-25 of chain B as orange ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 655 (char 654)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/4ins.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"B","beg_auth_seq_id":5,"end_auth_seq_id":25}},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"orange"}}]}]}]}}]}]}}grd-disulfide-1lyz invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 900 (char 899)Prompt: Load 1LYZ; protein as grey cartoon, and highlight the disulfide-bonded cysteines as yellow ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 900 (char 899)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1lyz.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":[{"auth_asym_id":"A","auth_seq_id":6},{"auth_asym_id":"A","auth_seq_id":30},{"auth_asym_id":"A","auth_seq_id":64},{"auth_asym_id":"A","auth_seq_id":76},{"auth_asym_id":"A","auth_seq_id":80},{"auth_asym_id":"A","auth_seq_id":94},{"auth_asym_id":"A","auth_seq_id":115},{"auth_asym_id":"A","auth_seq_id":127}]},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"yellow"}}]}]}]}}]}]}}grd-ligand-1hho-hem invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 677 (char 676)Prompt: Load 1HHO; show the protein as a grey cartoon and the HEM as orange ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 677 (char 676)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1hho.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":[{"auth_asym_id":"A","auth_seq_id":143},{"auth_asym_id":"B","auth_seq_id":147}]},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"orange"}}]}]}]}]}]}}}grd-ligand-2hhb-hem invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 621 (char 620)Prompt: Load 2HHB; show the protein as a grey cartoon and the HEM as orange ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 621 (char 620)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/2hhb.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"label_comp_id":"HEM"}},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"orange"}}]}]}]}]}]}}grd-ligand-3ptb-ca invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 636 (char 635)Prompt: Load 3PTB; show the protein as a grey cartoon and the CA as orange ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 636 (char 635)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/3ptb.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"A","auth_seq_id":480}},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"orange"}}]}]}]}]}]}}}grd-ligand-4ins-zn invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 673 (char 672)Prompt: Load 4INS; show the protein as a grey cartoon and the ZN as orange ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 673 (char 672)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/4ins.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":[{"auth_asym_id":"B","auth_seq_id":101},{"auth_asym_id":"D","auth_seq_id":101}]},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"orange"}}]}]}]}}]}]}}int-001 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 1192 (char 1191)Prompt: In oxymyoglobin 1A6M, show the protein as a grey cartoon, His64 and the bound O2 as ball-and-stick, and draw the hydrogen bond from His64 NE2 to the O2 molecule's terminal oxygen (atom O2) as a dashed line labelled with its length.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 1192 (char 1191)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1a6m.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"A","auth_seq_id":64}},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"orange"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"A","auth_seq_id":157}},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"orange"}}]}]},{"kind":"primitives","params":{"color":"yellow","label_color":"yellow"},"children":[{"kind":"primitive","params":{"kind":"distance_measurement","start":{"auth_asym_id":"A","auth_seq_id":64,"label_atom_id":"NE2"},"end":{"auth_asym_id":"A","auth_seq_id":157,"label_atom_id":"O2"},"radius":0.06,"dash_length":0.15,"label_template":"{{distance}}"}}]}]}}]}}]}int-002 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 1063 (char 1062)Prompt: Load 1A6M with the protein as a grey cartoon. Show the heme and the proximal histidine as ball-and-stick and measure the distance from the heme iron to the histidine's coordinating nitrogen.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 1063 (char 1062)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1a6m.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":[{"auth_asym_id":"A","auth_seq_id":154,"label_comp_id":"HEM"},{"auth_asym_id":"A","auth_seq_id":93,"label_comp_id":"HIS"}]},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"orange"}}]}]},{"kind":"primitives","params":{"color":"yellow","label_color":"yellow"},"children":[{"kind":"primitive","params":{"kind":"distance_measurement","start":{"auth_asym_id":"A","auth_seq_id":154,"label_atom_id":"FE"},"end":{"auth_asym_id":"A","auth_seq_id":93,"label_atom_id":"ND1"},"radius":0.06,"dash_length":0.15,"label_template":"{{distance}}"}}]}]}}]}]}}}int-003 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 1076 (char 1075)Prompt: In trypsin (3PTB), show the protein as a grey cartoon and the catalytic triad (His57, Asp102, Ser195) as ball-and-stick. Draw the two triad hydrogen bonds as dashed lines with their lengths.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 1076 (char 1075)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/3ptb.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":[{"auth_asym_id":"A","auth_seq_id":57},{"auth_asym_id":"A","auth_seq_id":102},{"auth_asym_id":"A","auth_seq_id":195}]},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"orange"}}]}]},{"kind":"primitives","params":{"color":"yellow","label_color":"yellow"},"children":[{"kind":"primitive","params":{"kind":"distance_measurement","start":{"auth_asym_id":"A","auth_seq_id":57,"label_atom_id":"NE2"},"end":{"auth_asym_id":"A","auth_seq_id":102,"label_atom_id":"OD1"},"color":"yellow","radius":0.06,"dash_length":0.12,"label_template":"{{distance}}"}},"{"kind":"primitive","params":{"kind":"distance_measurement","start":{"auth_asym_id":"A","auth_seq_id":102,"label_atom_id":"OD2"},"end":{"auth_asym_id":"A","auth_seq_id":195,"label_atom_id":"OG"},"color":"yellow","radius":0.06,"dash_length":0.12,"label_template":"{{distance}}"}}]}}]}}]}}int-006 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 665 (char 664)Prompt: Load haemoglobin 1HHO; show the protein as a 50% transparent surface and the heme groups as ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 665 (char 664)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1hho.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"surface"},"children":[{"kind":"color","params":{"color":"gray"}},{"kind":"opacity","params":{"opacity":0.5}}]}]},{"kind":"component","params":{"selector":{"label_comp_id":"HEM"}},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"orange"}}]}]}]}]}]}}res-cftr invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 471 (char 470)Prompt: show me the CFTR channel
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 471 (char 470)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/9mxl.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray","custom":{"molstar_color_theme_name":"chain-id"}}}]},"focus":{"params":{}}]}]}}]}}]}}res-myoglobin invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 619 (char 618)Prompt: Show me sperm whale myoglobin
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 619 (char 618)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/5YCE.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]},{"kind":"focus"}]},{"kind":"component","params":{"selector":"ligand"},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"orange"}}]}]}]}}]}]}}}res-pcsk9 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 444 (char 443)Prompt: show the structure of PCSK9
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 444 (char 443)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/7s5h.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"lightgray"}}]},{"kind":"focus"}]}]}]}]}}}mvs-002 invalid JSON JSON parse error: Expecting ',' delimiter: line 16 column 1 (char 1041)Prompt: Load haemoglobin (1HHO); show the protein as a grey cartoon and the heme groups as orange ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 16 column 1 (char 1041)
{"root": {"kind": "root", "children": [
{"kind": "download", "params": {"url": "https://files.rcsb.org/download/1hho.cif"},
"children": [
{"kind": "parse", "params": {"format": "mmcif"}, "children": [
{"kind": "structure", "params": {"type": "model"}, "children": [
{"kind": "component", "params": {"selector": "polymer"}, "children": [
{"kind": "representation", "params": {"type": "cartoon"}, "children": [
{"kind": "color", "params": {"color": "gray"}}]}]},
{"kind": "component", "params": {"selector": {"auth_asym_id": "A", "auth_seq_id": 143}}, "children": [
{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [
{"kind": "color", "params": {"color": "orange"}}]}]},
{"kind": "component", "params": {"selector": {"auth_asym_id": "B", "auth_seq_id": 147}}, "children": [
{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [
{"kind": "color", "params": {"color": "orange"}}]}]}
]}]}]}]}
]}}mvs-004 invalid JSON JSON parse error: Expecting ',' delimiter: line 15 column 1 (char 946)Prompt: Load HIV-1 protease (1HVR); protein as grey cartoon, the bound inhibitor as magenta ball-and-stick, and focus the camera on the inhibitor.
Parser: JSON parse error: Expecting ',' delimiter: line 15 column 1 (char 946)
{"root": {"kind": "root", "children": [
{"kind": "download", "params": {"url": "https://files.rcsb.org/download/1hvr.cif"},
"children": [
{"kind": "parse", "params": {"format": "mmcif"}, "children": [
{"kind": "structure", "params": {"type": "model"}, "children": [
{"kind": "component", "params": {"selector": "polymer"}, "children": [
{"kind": "representation", "params": {"type": "cartoon"}, "children": [
{"kind": "color", "params": {"color": "gray"}}]}]},
{"kind": "component", "params": {"selector": {"auth_asym_id": "A", "auth_seq_id": 263}}, "children": [
{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [
{"kind": "color", "params": {"color": "magenta"}}]}]},
{"kind": "component", "params": {"selector": {"auth_asym_id": "A", "auth_seq_id": 263}}, "children": [
{"kind": "focus", "params": {"radius": 1.5}}]}
]}]}]}]}
]}clinvar-1tup-D281 invalid JSON JSON parse error: Expecting ',' delimiter: line 13 column 1 (char 569)Prompt: In p53 (PDB 1TUP), chain A, highlight the residue affected by the pathogenic ClinVar variant D281Y as red ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 13 column 1 (char 569)
{"root": {"kind": "root", "children": [
{"kind": "download", "params": {"url": "https://files.rcsb.org/download/1tup.cif"},
"children": [
{"kind": "parse", "params": {"format": "mmcif"}, "children": [
{"kind": "structure", "params": {"type": "model"}, "children": [
{"kind": "component", "params": {"selector": {"auth_asym_id": "A", "auth_seq_id": 281}}, "children": [
{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [
{"kind": "color", "params": {"color": "red"}}]}]
}
]}]}
]}
]}
]}}clinvar-1tup-N239 invalid JSON JSON parse error: Expecting ',' delimiter: line 8 column 69 (char 566)Prompt: In p53 (PDB 1TUP), chain A, highlight the residue affected by the pathogenic ClinVar variant N239T as red ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 8 column 69 (char 566)
{"root": {"kind": "root", "children": [
{"kind": "download", "params": {"url": "https://files.rcsb.org/download/1tup.cif"},
"children": [
{"kind": "parse", "params": {"format": "mmcif"}, "children": [
{"kind": "structure", "params": {"type": "model"}, "children": [
{"kind": "component", "params": {"selector": {"auth_asym_id": "A", "auth_seq_id": 239}}, "children": [
{"kind": "representation", "params": {"type": "ball_and_stick", "size_factor": 1.0}, "children": [
{"kind": "color", "params": {"color": "red"}}]}]}]}]}]}]}]}clinvar-1tup-S215 invalid JSON JSON parse error: Expecting ',' delimiter: line 8 column 69 (char 566)Prompt: In p53 (PDB 1TUP), chain A, highlight the residue affected by the pathogenic ClinVar variant S215T as red ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 8 column 69 (char 566)
{"root": {"kind": "root", "children": [
{"kind": "download", "params": {"url": "https://files.rcsb.org/download/1tup.cif"},
"children": [
{"kind": "parse", "params": {"format": "mmcif"}, "children": [
{"kind": "structure", "params": {"type": "model"}, "children": [
{"kind": "component", "params": {"selector": {"auth_asym_id": "A", "auth_seq_id": 215}}, "children": [
{"kind": "representation", "params": {"type": "ball_and_stick", "size_factor": 1.0}, "children": [
{"kind": "color", "params": {"color": "red"}}]}]}]}]}]}]}]}clinvar-1tup-S241 invalid JSON JSON parse error: Expecting ',' delimiter: line 8 column 69 (char 546)Prompt: In p53 (PDB 1TUP), chain A, highlight the residue affected by the pathogenic ClinVar variant S241Y as red ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 8 column 69 (char 546)
{"root": {"kind": "root", "children": [
{"kind": "download", "params": {"url": "https://files.rcsb.org/download/1tup.cif"},
"children": [
{"kind": "parse", "params": {"format": "mmcif"}, "children": [
{"kind": "structure", "params": {"type": "model"}, "children": [
{"kind": "component", "params": {"selector": {"auth_asym_id": "A", "auth_seq_id": 241}}, "children": [
{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [
{"kind": "color", "params": {"color": "red"}}]}]}]}]}]}]}]}hotspots-1tup invalid JSON JSON parse error: Expecting ',' delimiter: line 20 column 14 (char 897)Prompt: In p53 (PDB 1TUP), chain A, highlight the 6 mutational hotspot residues — the positions carrying the most pathogenic ClinVar variants — as red spheres.
Parser: JSON parse error: Expecting ',' delimiter: line 20 column 14 (char 897)
{"root": {"kind": "root", "children": [
{"kind": "download", "params": {"url": "https://files.rcsb.org/download/1tup.cif"},
"children": [
{"kind": "parse", "params": {"format": "mmcif"}, "children": [
{"kind": "structure", "params": {"type": "model"}, "children": [
{"kind": "component", "params": {
"selector": [
{"auth_asym_id": "A", "auth_seq_id": 215},
{"auth_asym_id": "A", "auth_seq_id": 109},
{"auth_asym_id": "A", "auth_seq_id": 281},
{"auth_asym_id": "A", "auth_seq_id": 110},
{"auth_asym_id": "A", "auth_seq_id": 239},
{"auth_asym_id": "A", "auth_seq_id": 241}
]
}, "children": [
{"kind": "representation", "params": {"type": "spacefill", "size_factor": 1.2}, "children": [
{"kind": "color", "params": {"color": "red"}}
]}
]}
]}]}]}]}]}named-1tup-143 invalid JSON JSON parse error: Expecting ',' delimiter: line 8 column 70 (char 547)Prompt: In p53 (PDB 1TUP), chain A, select the residue at canonical UniProt position 143 and show it as blue ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 8 column 70 (char 547)
{"root": {"kind": "root", "children": [
{"kind": "download", "params": {"url": "https://files.rcsb.org/download/1tup.cif"},
"children": [
{"kind": "parse", "params": {"format": "mmcif"}, "children": [
{"kind": "structure", "params": {"type": "model"}, "children": [
{"kind": "component", "params": {"selector": {"auth_asym_id": "A", "auth_seq_id": 143}}, "children": [
{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [
{"kind": "color", "params": {"color": "blue"}}]}]}]}]}]}]}]}named-1tup-248 invalid JSON JSON parse error: Expecting ',' delimiter: line 8 column 70 (char 547)Prompt: In p53 (PDB 1TUP), chain A, select the residue at canonical UniProt position 248 and show it as blue ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 8 column 70 (char 547)
{"root": {"kind": "root", "children": [
{"kind": "download", "params": {"url": "https://files.rcsb.org/download/1tup.cif"},
"children": [
{"kind": "parse", "params": {"format": "mmcif"}, "children": [
{"kind": "structure", "params": {"type": "model"}, "children": [
{"kind": "component", "params": {"selector": {"auth_asym_id": "A", "auth_seq_id": 248}}, "children": [
{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [
{"kind": "color", "params": {"color": "blue"}}]}]}]}]}]}]}]}gen-cartoon-1cbs invalid JSON JSON parse error: Expecting ',' delimiter: line 13 column 1 (char 538)Prompt: Load cellular retinoic-acid binding protein (1CBS) and show the protein as a purple cartoon.
Parser: JSON parse error: Expecting ',' delimiter: line 13 column 1 (char 538)
{"root": {"kind": "root", "children": [
{"kind": "download", "params": {"url": "https://files.rcsb.org/download/1cbs.cif"},
"children": [
{"kind": "parse", "params": {"format": "mmcif"}, "children": [
{"kind": "structure", "params": {"type": "model"}, "children": [
{"kind": "component", "params": {"selector": "protein"}, "children": [
{"kind": "representation", "params": {"type": "cartoon"}, "children": [
{"kind": "color", "params": {"color": "purple"}}
]}
]}
]}]}]}
]}
]}gen-cartoon-1hho invalid JSON JSON parse error: Expecting ',' delimiter: line 8 column 69 (char 507)Prompt: Load haemoglobin (1HHO) and show the protein as a red cartoon.
Parser: JSON parse error: Expecting ',' delimiter: line 8 column 69 (char 507)
{"root": {"kind": "root", "children": [
{"kind": "download", "params": {"url": "https://files.rcsb.org/download/1hho.cif"},
"children": [
{"kind": "parse", "params": {"format": "mmcif"}, "children": [
{"kind": "structure", "params": {"type": "model"}, "children": [
{"kind": "component", "params": {"selector": "polymer"}, "children": [
{"kind": "representation", "params": {"type": "cartoon"}, "children": [
{"kind": "color", "params": {"color": "red"}}]}]}]}]}]}]}]}gen-cartoon-1lyz invalid JSON JSON parse error: Expecting ',' delimiter: line 9 column 14 (char 515)Prompt: Load lysozyme (1LYZ) and show the protein as a green cartoon.
Parser: JSON parse error: Expecting ',' delimiter: line 9 column 14 (char 515)
{"root": {"kind": "root", "children": [
{"kind": "download", "params": {"url": "https://files.rcsb.org/download/1lyz.cif"},
"children": [
{"kind": "parse", "params": {"format": "mmcif"}, "children": [
{"kind": "structure", "params": {"type": "model"}, "children": [
{"kind": "component", "params": {"selector": "protein"}, "children": [
{"kind": "representation", "params": {"type": "cartoon"}, "children": [
{"kind": "color", "params": {"color": "green"}}]}]}
]}]}]}]}]}gen-cartoon-2hhb invalid JSON JSON parse error: Expecting ',' delimiter: line 10 column 1 (char 515)Prompt: Load deoxyhaemoglobin (2HHB) and show the protein as a teal cartoon.
Parser: JSON parse error: Expecting ',' delimiter: line 10 column 1 (char 515)
{"root": {"kind": "root", "children": [
{"kind": "download", "params": {"url": "https://files.rcsb.org/download/2hhb.cif"},
"children": [
{"kind": "parse", "params": {"format": "mmcif"}, "children": [
{"kind": "structure", "params": {"type": "model"}, "children": [
{"kind": "component", "params": {"selector": "polymer"}, "children": [
{"kind": "representation", "params": {"type": "cartoon"}, "children": [
{"kind": "color", "params": {"color": "teal"}}]}]}
]}]}]}]}
]}}gen-chain-1cbs invalid JSON JSON parse error: Expecting ',' delimiter: line 13 column 14 (char 869)Prompt: Load 1CBS; show everything as a grey cartoon, then colour chain A purple.
Parser: JSON parse error: Expecting ',' delimiter: line 13 column 14 (char 869)
{"root": {"kind": "root", "children": [
{"kind": "download", "params": {"url": "https://files.rcsb.org/download/1cbs.cif"},
"children": [
{"kind": "parse", "params": {"format": "mmcif"}, "children": [
{"kind": "structure", "params": {"type": "model"}, "children": [
{"kind": "component", "params": {"selector": "polymer"}, "children": [
{"kind": "representation", "params": {"type": "cartoon"}, "children": [
{"kind": "color", "params": {"color": "gray"}}]}],
"custom": {"molstar_show_non_covalent_interactions": true, "molstar_non_covalent_interactions_radius_ang": 5}},
{"kind": "component", "params": {"selector": {"auth_asym_id": "A"}}, "children": [
{"kind": "representation", "params": {"type": "cartoon"}, "children": [
{"kind": "color", "params": {"color": "purple"}}]}]}
]}]}]}]}]}gen-chain-1lyz invalid JSON JSON parse error: Expecting ',' delimiter: line 13 column 1 (char 750)Prompt: Load 1LYZ; show everything as a grey cartoon, then colour chain A green.
Parser: JSON parse error: Expecting ',' delimiter: line 13 column 1 (char 750)
{"root": {"kind": "root", "children": [
{"kind": "download", "params": {"url": "https://files.rcsb.org/download/1lyz.cif"},
"children": [
{"kind": "parse", "params": {"format": "mmcif"}, "children": [
{"kind": "structure", "params": {"type": "model"}, "children": [
{"kind": "component", "params": {"selector": "polymer"}, "children": [
{"kind": "representation", "params": {"type": "cartoon"}, "children": [
{"kind": "color", "params": {"color": "gray"}}]}]},
{"kind": "component", "params": {"selector": {"auth_asym_id": "A"}}, "children": [
{"kind": "representation", "params": {"type": "cartoon"}, "children": [
{"kind": "color", "params": {"color": "green"}}]}]}
]}]}]}]}
]}}gen-focus-1hho invalid JSON JSON parse error: Expecting ',' delimiter: line 25 column 14 (char 1887)Prompt: Load 1HHO; grey cartoon protein, magenta ball-and-stick ligands, and focus the camera on the ligand.
Parser: JSON parse error: Expecting ',' delimiter: line 25 column 14 (char 1887)
{"root": {"kind": "root", "children": [
{"kind": "download", "params": {"url": "https://files.rcsb.org/download/1hho.cif"},
"children": [
{"kind": "parse", "params": {"format": "mmcif"}, "children": [
{"kind": "structure", "params": {"type": "model"}, "children": [
{"kind": "component", "params": {"selector": "protein"}, "children": [
{"kind": "representation", "params": {"type": "cartoon"}, "children": [
{"kind": "color", "params": {"color": "gray"}}]}]},
{"kind": "component", "params": {"selector": {"auth_asym_id": "A", "auth_seq_id": 150}}, "children": [
{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [
{"kind": "color", "params": {"color": "magenta"}}]}]},
{"kind": "component", "params": {"selector": {"auth_asym_id": "B", "auth_seq_id": 150}}, "children": [
{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [
{"kind": "color", "params": {"color": "magenta"}}]}]},
{"kind": "component", "params": {"selector": {"auth_asym_id": "A", "auth_seq_id": 143}}, "children": [
{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [
{"kind": "color", "params": {"color": "magenta"}}]}]},
{"kind": "component", "params": {"selector": {"auth_asym_id": "B", "auth_seq_id": 147}}, "children": [
{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [
{"kind": "color", "params": {"color": "magenta"}}]}]},
{"kind": "component", "params": {"selector": {"auth_asym_id": "A", "auth_seq_id": 142}}, "children": [
{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [
{"kind": "color", "params": {"color": "magenta"}}]}]},
{"kind": "focus", "params": {"radius": 1.5}}
]}]}]}]}]}gen-focus-2hhb invalid JSON JSON parse error: Expecting ',' delimiter: line 28 column 14 (char 2151)Prompt: Load 2HHB; grey cartoon protein, magenta ball-and-stick ligands, and focus the camera on the ligand.
Parser: JSON parse error: Expecting ',' delimiter: line 28 column 14 (char 2151)
{"root": {"kind": "root", "children": [
{"kind": "download", "params": {"url": "https://files.rcsb.org/download/2hhb.cif"},
"children": [
{"kind": "parse", "params": {"format": "mmcif"}, "children": [
{"kind": "structure", "params": {"type": "model"}, "children": [
{"kind": "component", "params": {"selector": "polymer"}, "children": [
{"kind": "representation", "params": {"type": "cartoon"}, "children": [
{"kind": "color", "params": {"color": "gray"}}]}]},
{"kind": "component", "params": {"selector": {"auth_asym_id": "A", "auth_seq_id": 142}}, "children": [
{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [
{"kind": "color", "params": {"color": "magenta"}}]}]},
{"kind": "component", "params": {"selector": {"auth_asym_id": "B", "auth_seq_id": 148}}, "children": [
{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [
{"kind": "color", "params": {"color": "magenta"}}]}]},
{"kind": "component", "params": {"selector": {"auth_asym_id": "C", "auth_seq_id": 142}}, "children": [
{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [
{"kind": "color", "params": {"color": "magenta"}}]}]},
{"kind": "component", "params": {"selector": {"auth_asym_id": "D", "auth_seq_id": 148}}, "children": [
{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [
{"kind": "color", "params": {"color": "magenta"}}]}]},
{"kind": "component", "params": {"selector": {"auth_asym_id": "B", "auth_seq_id": 147}}, "children": [
{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [
{"kind": "color", "params": {"color": "magenta"}}]}]},
{"kind": "component", "params": {"selector": {"auth_asym_id": "D", "auth_seq_id": 147}}, "children": [
{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [
{"kind": "color", "params": {"color": "magenta"}}]}]},
{"kind": "focus", "params": {"radius": 1.5}}
]}]}]}]}]}gen-ions-1hho invalid JSON JSON parse error: Expecting ',' delimiter: line 13 column 1 (char 757)Prompt: Load 1HHO; protein as grey cartoon, and show the ions as purple spheres.
Parser: JSON parse error: Expecting ',' delimiter: line 13 column 1 (char 757)
{"root": {"kind": "root", "children": [
{"kind": "download", "params": {"url": "https://files.rcsb.org/download/1hho.cif"},
"children": [
{"kind": "parse", "params": {"format": "mmcif"}, "children": [
{"kind": "structure", "params": {"type": "model"}, "children": [
{"kind": "component", "params": {"selector": "polymer"}, "children": [
{"kind": "representation", "params": {"type": "cartoon"}, "children": [
{"kind": "color", "params": {"color": "gray"}}]}]},
{"kind": "component", "params": {"selector": "ion"}, "children": [
{"kind": "representation", "params": {"type": "spacefill", "size_factor": 1.2}, "children": [
{"kind": "color", "params": {"color": "purple"}}]}]}
]}]}]}]}
]}}gen-ions-2hhb invalid JSON JSON parse error: Expecting ',' delimiter: line 13 column 1 (char 757)Prompt: Load 2HHB; protein as grey cartoon, and show the ions as purple spheres.
Parser: JSON parse error: Expecting ',' delimiter: line 13 column 1 (char 757)
{"root": {"kind": "root", "children": [
{"kind": "download", "params": {"url": "https://files.rcsb.org/download/2hhb.cif"},
"children": [
{"kind": "parse", "params": {"format": "mmcif"}, "children": [
{"kind": "structure", "params": {"type": "model"}, "children": [
{"kind": "component", "params": {"selector": "polymer"}, "children": [
{"kind": "representation", "params": {"type": "cartoon"}, "children": [
{"kind": "color", "params": {"color": "gray"}}]}]},
{"kind": "component", "params": {"selector": "ion"}, "children": [
{"kind": "representation", "params": {"type": "spacefill", "size_factor": 1.2}, "children": [
{"kind": "color", "params": {"color": "purple"}}]}]}
]}]}]}]}
]}}gen-ions-3ptb invalid JSON JSON parse error: Expecting ',' delimiter: line 13 column 1 (char 757)Prompt: Load 3PTB; protein as grey cartoon, and show the ions as purple spheres.
Parser: JSON parse error: Expecting ',' delimiter: line 13 column 1 (char 757)
{"root": {"kind": "root", "children": [
{"kind": "download", "params": {"url": "https://files.rcsb.org/download/3ptb.cif"},
"children": [
{"kind": "parse", "params": {"format": "mmcif"}, "children": [
{"kind": "structure", "params": {"type": "model"}, "children": [
{"kind": "component", "params": {"selector": "protein"}, "children": [
{"kind": "representation", "params": {"type": "cartoon"}, "children": [
{"kind": "color", "params": {"color": "gray"}}]}]},
{"kind": "component", "params": {"selector": "ion"}, "children": [
{"kind": "representation", "params": {"type": "spacefill", "size_factor": 1.2}, "children": [
{"kind": "color", "params": {"color": "purple"}}]}]}
]}]}]}]}
]}}gen-ions-4ins invalid JSON JSON parse error: Expecting ',' delimiter: line 13 column 1 (char 773)Prompt: Load 4INS; protein as grey cartoon, and show the ions as purple spheres.
Parser: JSON parse error: Expecting ',' delimiter: line 13 column 1 (char 773)
{"root": {"kind": "root", "children": [
{"kind": "download", "params": {"url": "https://files.rcsb.org/download/4ins.cif"},
"children": [
{"kind": "parse", "params": {"format": "mmcif"}, "children": [
{"kind": "structure", "params": {"type": "model"}, "children": [
{"kind": "component", "params": {"selector": "polymer"}, "children": [
{"kind": "representation", "params": {"type": "cartoon"}, "children": [
{"kind": "color", "params": {"color": "gray"}}]}]},
{"kind": "component", "params": {"selector": {"type_symbol": "ZN"}}, "children": [
{"kind": "representation", "params": {"type": "spacefill", "size_factor": 1.5}, "children": [
{"kind": "color", "params": {"color": "purple"}}]}]}
]}]}]}]}
]}}gen-ligands-1cbs invalid JSON JSON parse error: Expecting ',' delimiter: line 17 column 1 (char 880)Prompt: Load 1CBS; show the protein as a grey cartoon and the ligands as purple ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 17 column 1 (char 880)
{"root": {"kind": "root", "children": [
{"kind": "download", "params": {"url": "https://files.rcsb.org/download/1cbs.cif"},
"children": [
{"kind": "parse", "params": {"format": "mmcif"}, "children": [
{"kind": "structure", "params": {"type": "model"}, "children": [
{"kind": "component", "params": {"selector": "protein"}, "children": [
{"kind": "representation", "params": {"type": "cartoon"}, "children": [
{"kind": "color", "params": {"color": "gray"}}]}],
"custom": {"molstar_color_theme_name": "sequence-id"}},
{"kind": "component", "params": {"selector": {"auth_asym_id": "A", "auth_seq_id": 200, "label_comp_id": "REA"}}, "children": [
{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [
{"kind": "color", "params": {"color": "purple"}}]}]
}
]}]}
]}
]}
]}}gen-ligands-2hhb invalid JSON JSON parse error: Expecting ',' delimiter: line 34 column 1 (char 2129)Prompt: Load 2HHB; show the protein as a grey cartoon and the ligands as teal ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 34 column 1 (char 2129)
{"root": {"kind": "root", "children": [
{"kind": "download", "params": {"url": "https://files.rcsb.org/download/2hhb.cif"},
"children": [
{"kind": "parse", "params": {"format": "mmcif"}, "children": [
{"kind": "structure", "params": {"type": "model"}, "children": [
{"kind": "component", "params": {"selector": "polymer"}, "children": [
{"kind": "representation", "params": {"type": "cartoon"}, "children": [
{"kind": "color", "params": {"color": "gray"}}]}]},
{"kind": "component", "params": {"selector": {"auth_asym_id": "A", "auth_seq_id": 142}},
"children": [
{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [
{"kind": "color", "params": {"color": "teal"}}]}]},
{"kind": "component", "params": {"selector": {"auth_asym_id": "B", "auth_seq_id": 148}},
"children": [
{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [
{"kind": "color", "params": {"color": "teal"}}]}]},
{"kind": "component", "params": {"selector": {"auth_asym_id": "C", "auth_seq_id": 142}},
"children": [
{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [
{"kind": "color", "params": {"color": "teal"}}]}]},
{"kind": "component", "params": {"selector": {"auth_asym_id": "D", "auth_seq_id": 148}},
"children": [
{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [
{"kind": "color", "params": {"color": "teal"}}]}]},
{"kind": "component", "params": {"selector": {"auth_asym_id": "B", "auth_seq_id": 147}},
"children": [
{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [
{"kind": "color", "params": {"color": "teal"}}]}]},
{"kind": "component", "params": {"selector": {"auth_asym_id": "D", "auth_seq_id": 147}},
"children": [
{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [
{"kind": "color", "params": {"color": "teal"}}]}]}
]}]}]}]}
]}}gen-range-1cbs invalid JSON JSON parse error: Expecting ',' delimiter: line 13 column 1 (char 806)Prompt: Load 1CBS; protein as grey cartoon, and show residues 20-60 of chain A as orange ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 13 column 1 (char 806)
{"root": {"kind": "root", "children": [
{"kind": "download", "params": {"url": "https://files.rcsb.org/download/1cbs.cif"},
"children": [
{"kind": "parse", "params": {"format": "mmcif"}, "children": [
{"kind": "structure", "params": {"type": "model"}, "children": [
{"kind": "component", "params": {"selector": "protein"}, "children": [
{"kind": "representation", "params": {"type": "cartoon"}, "children": [
{"kind": "color", "params": {"color": "gray"}}]}]},
{"kind": "component", "params": {"selector": [{"auth_asym_id": "A", "beg_auth_seq_id": 20, "end_auth_seq_id": 60}]}, "children": [
{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [
{"kind": "color", "params": {"color": "orange"}}]}]}
]}]}]}]}
]}}gen-range-1hho invalid JSON JSON parse error: Expecting ',' delimiter: line 13 column 1 (char 806)Prompt: Load 1HHO; protein as grey cartoon, and show residues 30-90 of chain A as orange ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 13 column 1 (char 806)
{"root": {"kind": "root", "children": [
{"kind": "download", "params": {"url": "https://files.rcsb.org/download/1hho.cif"},
"children": [
{"kind": "parse", "params": {"format": "mmcif"}, "children": [
{"kind": "structure", "params": {"type": "model"}, "children": [
{"kind": "component", "params": {"selector": "polymer"}, "children": [
{"kind": "representation", "params": {"type": "cartoon"}, "children": [
{"kind": "color", "params": {"color": "gray"}}]}]},
{"kind": "component", "params": {"selector": [{"auth_asym_id": "A", "beg_auth_seq_id": 30, "end_auth_seq_id": 90}]}, "children": [
{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [
{"kind": "color", "params": {"color": "orange"}}]}]}
]}]}]}]}
]}gen-range-3ptb invalid JSON JSON parse error: Expecting ',' delimiter: line 13 column 1 (char 807)Prompt: Load 3PTB; protein as grey cartoon, and show residues 50-110 of chain A as orange ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 13 column 1 (char 807)
{"root": {"kind": "root", "children": [
{"kind": "download", "params": {"url": "https://files.rcsb.org/download/3ptb.cif"},
"children": [
{"kind": "parse", "params": {"format": "mmcif"}, "children": [
{"kind": "structure", "params": {"type": "model"}, "children": [
{"kind": "component", "params": {"selector": "polymer"}, "children": [
{"kind": "representation", "params": {"type": "cartoon"}, "children": [
{"kind": "color", "params": {"color": "gray"}}]}]},
{"kind": "component", "params": {"selector": [{"auth_asym_id": "A", "beg_auth_seq_id": 50, "end_auth_seq_id": 110}]}, "children": [
{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [
{"kind": "color", "params": {"color": "orange"}}]}]}
]}]}]}]}
]}}gen-range-4ins invalid JSON JSON parse error: Expecting ',' delimiter: line 13 column 1 (char 803)Prompt: Load 4INS; protein as grey cartoon, and show residues 5-25 of chain B as orange ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 13 column 1 (char 803)
{"root": {"kind": "root", "children": [
{"kind": "download", "params": {"url": "https://files.rcsb.org/download/4ins.cif"},
"children": [
{"kind": "parse", "params": {"format": "mmcif"}, "children": [
{"kind": "structure", "params": {"type": "model"}, "children": [
{"kind": "component", "params": {"selector": "protein"}, "children": [
{"kind": "representation", "params": {"type": "cartoon"}, "children": [
{"kind": "color", "params": {"color": "gray"}}]}]},
{"kind": "component", "params": {"selector": {"auth_asym_id": "B", "beg_auth_seq_id": 5, "end_auth_seq_id": 25}}, "children": [
{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [
{"kind": "color", "params": {"color": "orange"}}]}]}
]}]}]}]}
]}gen-surface-1cbs invalid JSON JSON parse error: Expecting ',' delimiter: line 12 column 4 (char 536)Prompt: Load 1CBS; render the protein as a steelblue molecular surface.
Parser: JSON parse error: Expecting ',' delimiter: line 12 column 4 (char 536)
{"root": {"kind": "root", "children": [
{"kind": "download", "params": {"url": "https://files.rcsb.org/download/1cbs.cif"},
"children": [
{"kind": "parse", "params": {"format": "mmcif"}, "children": [
{"kind": "structure", "params": {"type": "model"}, "children": [
{"kind": "component", "params": {"selector": "protein"}, "children": [
{"kind": "representation", "params": {"type": "surface"}, "children": [
{"kind": "color", "params": {"color": "steelblue"}}
]}
]}
]}]
]}
]}}]}gen-surface-1hho invalid JSON JSON parse error: Expecting ',' delimiter: line 8 column 75 (char 513)Prompt: Load 1HHO; render the protein as a steelblue molecular surface.
Parser: JSON parse error: Expecting ',' delimiter: line 8 column 75 (char 513)
{"root": {"kind": "root", "children": [
{"kind": "download", "params": {"url": "https://files.rcsb.org/download/1hho.cif"},
"children": [
{"kind": "parse", "params": {"format": "mmcif"}, "children": [
{"kind": "structure", "params": {"type": "model"}, "children": [
{"kind": "component", "params": {"selector": "protein"}, "children": [
{"kind": "representation", "params": {"type": "surface"}, "children": [
{"kind": "color", "params": {"color": "steelblue"}}]}]}]}]}]}]}]}gen-surface-3ptb invalid JSON JSON parse error: Expecting ',' delimiter: line 14 column 1 (char 561)Prompt: Load 3PTB; render the protein as a plum molecular surface.
Parser: JSON parse error: Expecting ',' delimiter: line 14 column 1 (char 561)
{"root": {"kind": "root", "children": [
{"kind": "download", "params": {"url": "https://files.rcsb.org/download/3ptb.cif"},
"children": [
{"kind": "parse", "params": {"format": "mmcif"}, "children": [
{"kind": "structure", "params": {"type": "model"}, "children": [
{"kind": "component", "params": {"selector": "protein"}, "children": [
{"kind": "representation", "params": {"type": "surface", "size_factor": 1.0}, "children": [
{"kind": "color", "params": {"color": "plum"}}
]}
]}
]}]}
]}
]}
]}}gen-surface-4ins invalid JSON JSON parse error: Expecting ',' delimiter: line 12 column 1 (char 535)Prompt: Load 4INS; render the protein as a salmon molecular surface.
Parser: JSON parse error: Expecting ',' delimiter: line 12 column 1 (char 535)
{"root": {"kind": "root", "children": [
{"kind": "download", "params": {"url": "https://files.rcsb.org/download/4ins.cif"},
"children": [
{"kind": "parse", "params": {"format": "mmcif"}, "children": [
{"kind": "structure", "params": {"type": "model"}, "children": [
{"kind": "component", "params": {"selector": "polymer"}, "children": [
{"kind": "representation", "params": {"type": "surface"}, "children": [
{"kind": "color", "params": {"color": "salmon"}}
]}
]}
]}]}]}]}
]}}grd-disulfide-3ptb invalid JSON JSON parse error: Expecting ',' delimiter: line 15 column 1 (char 830)Prompt: Load 3PTB; protein as grey cartoon, and highlight the disulfide-bonded cysteines as yellow ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 15 column 1 (char 830)
{"root": {"kind": "root", "children": [
{"kind": "download", "params": {"url": "https://files.rcsb.org/download/3ptb.cif"},
"children": [
{"kind": "parse", "params": {"format": "mmcif"}, "children": [
{"kind": "structure", "params": {"type": "model"}, "children": [
{"kind": "component", "params": {"selector": "protein"}, "children": [
{"kind": "representation", "params": {"type": "cartoon"}, "children": [
{"kind": "color", "params": {"color": "gray"}}]}]},
{"kind": "component", "params": {"selector": [{"auth_asym_id": "A", "auth_seq_id": 18}, {"auth_asym_id": "A", "auth_seq_id": 171}]}, "children": [
{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [
{"kind": "color", "params": {"color": "yellow"}}]}]}
]}]}
]}
]}
]}}grd-disulfide-4ins invalid JSON JSON parse error: Expecting ',' delimiter: line 16 column 1 (char 1217)Prompt: Load 4INS; protein as grey cartoon, and highlight the disulfide-bonded cysteines as yellow ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 16 column 1 (char 1217)
{"root": {"kind": "root", "children": [
{"kind": "download", "params": {"url": "https://files.rcsb.org/download/4ins.cif"},
"children": [
{"kind": "parse", "params": {"format": "mmcif"}, "children": [
{"kind": "structure", "params": {"type": "model"}, "children": [
{"kind": "component", "params": {"selector": "polymer"}, "children": [
{"kind": "representation", "params": {"type": "cartoon"}, "children": [
{"kind": "color", "params": {"color": "gray"}}]}]},
{"kind": "component", "params": {"selector": [{"auth_asym_id": "A", "auth_seq_id": 7, "label_atom_id": "SG"}, {"auth_asym_id": "B", "auth_seq_id": 7, "label_atom_id": "SG"}]}, "children": [
{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [
{"kind": "color", "params": {"color": "yellow"}}]}]},
{"kind": "component", "params": {"selector": [{"auth_asym_id": "A", "auth_seq_id": 19, "label_atom_id": "SG"}, {"auth_asym_id": "B", "auth_seq_id": 19, "label_atom_id": "SG"}]}, "children": [
{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [
{"kind": "color", "params": {"color": "yellow"}}]}]}
]}]}]}]}
]}}grd-ligand-1cbs-rea invalid JSON JSON parse error: Expecting ',' delimiter: line 13 column 1 (char 802)Prompt: Load 1CBS; show the protein as a grey cartoon and the REA as orange ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 13 column 1 (char 802)
{"root": {"kind": "root", "children": [
{"kind": "download", "params": {"url": "https://files.rcsb.org/download/1cbs.cif"},
"children": [
{"kind": "parse", "params": {"format": "mmcif"}, "children": [
{"kind": "structure", "params": {"type": "model"}, "children": [
{"kind": "component", "params": {"selector": "protein"}, "children": [
{"kind": "representation", "params": {"type": "cartoon"}, "children": [
{"kind": "color", "params": {"color": "gray"}}]}]},
{"kind": "component", "params": {"selector": {"auth_asym_id": "A", "auth_seq_id": 200, "label_comp_id": "REA"}}, "children": [
{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [
{"kind": "color", "params": {"color": "orange"}}]}]}
]}]}]}]}
]}}grd-ligand-2hhb-hem invalid JSON JSON parse error: Expecting ',' delimiter: line 12 column 14 (char 759)Prompt: Load 2HHB; show the protein as a grey cartoon and the HEM as orange ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 12 column 14 (char 759)
{"root": {"kind": "root", "children": [
{"kind": "download", "params": {"url": "https://files.rcsb.org/download/2hhb.cif"},
"children": [
{"kind": "parse", "params": {"format": "mmcif"}, "children": [
{"kind": "structure", "params": {"type": "model"}, "children": [
{"kind": "component", "params": {"selector": "polymer"}, "children": [
{"kind": "representation", "params": {"type": "cartoon"}, "children": [
{"kind": "color", "params": {"color": "gray"}}]}]},
{"kind": "component", "params": {"selector": {"auth_comp_id": "HEM"}}, "children": [
{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [
{"kind": "color", "params": {"color": "orange"}}]}]}
]}]}]}]}]}grd-ligand-3ptb-ca invalid JSON JSON parse error: Expecting ',' delimiter: line 13 column 1 (char 781)Prompt: Load 3PTB; show the protein as a grey cartoon and the CA as orange ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 13 column 1 (char 781)
{"root": {"kind": "root", "children": [
{"kind": "download", "params": {"url": "https://files.rcsb.org/download/3ptb.cif"},
"children": [
{"kind": "parse", "params": {"format": "mmcif"}, "children": [
{"kind": "structure", "params": {"type": "model"}, "children": [
{"kind": "component", "params": {"selector": "protein"}, "children": [
{"kind": "representation", "params": {"type": "cartoon"}, "children": [
{"kind": "color", "params": {"color": "gray"}}]}]},
{"kind": "component", "params": {"selector": {"auth_asym_id": "A", "label_atom_id": "CA"}}, "children": [
{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [
{"kind": "color", "params": {"color": "orange"}}]}]}
]}]}]}]}
]}grd-ligand-4ins-zn invalid JSON JSON parse error: Expecting ',' delimiter: line 13 column 1 (char 759)Prompt: Load 4INS; show the protein as a grey cartoon and the ZN as orange ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 13 column 1 (char 759)
{"root": {"kind": "root", "children": [
{"kind": "download", "params": {"url": "https://files.rcsb.org/download/4ins.cif"},
"children": [
{"kind": "parse", "params": {"format": "mmcif"}, "children": [
{"kind": "structure", "params": {"type": "model"}, "children": [
{"kind": "component", "params": {"selector": "polymer"}, "children": [
{"kind": "representation", "params": {"type": "cartoon"}, "children": [
{"kind": "color", "params": {"color": "gray"}}]}]},
{"kind": "component", "params": {"selector": {"auth_comp_id": "ZN"}}, "children": [
{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [
{"kind": "color", "params": {"color": "orange"}}]}]}
]}]}]}]}
]}}int-001 invalid JSON JSON parse error: Expecting ',' delimiter: line 22 column 14 (char 1548)Prompt: In oxymyoglobin 1A6M, show the protein as a grey cartoon, His64 and the bound O2 as ball-and-stick, and draw the hydrogen bond from His64 NE2 to the O2 molecule's terminal oxygen (atom O2) as a dashed line labelled with its length.
Parser: JSON parse error: Expecting ',' delimiter: line 22 column 14 (char 1548)
{"root": {"kind": "root", "children": [
{"kind": "download", "params": {"url": "https://files.rcsb.org/download/1a6m.cif"},
"children": [
{"kind": "parse", "params": {"format": "mmcif"}, "children": [
{"kind": "structure", "params": {"type": "model"}, "children": [
{"kind": "component", "params": {"selector": "polymer"}, "children": [
{"kind": "representation", "params": {"type": "cartoon"}, "children": [
{"kind": "color", "params": {"color": "gray"}}]}]},
{"kind": "component", "params": {"selector": {"auth_asym_id": "A", "auth_seq_id": 64, "label_comp_id": "HIS"}}, "children": [
{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [
{"kind": "color", "params": {"color": "orange"}}]}]},
{"kind": "component", "params": {"selector": {"auth_asym_id": "A", "auth_seq_id": 157, "label_comp_id": "OXY"}}, "children": [
{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [
{"kind": "color", "params": {"color": "red"}}]}]},
{"kind": "primitives", "params": {"color": "blue", "label_color": "blue", "opacity": 0.8}, "children": [
{"kind": "primitive", "params": {"kind": "distance_measurement",
"start": {"auth_asym_id": "A", "auth_seq_id": 64, "label_atom_id": "NE2"},
"end": {"auth_asym_id": "A", "auth_seq_id": 157, "label_atom_id": "O2"},
"radius": 0.06,
"dash_length": 0.15,
"label_template": "{{distance}}"}}]}
]}]}]}]}]}]}int-002 invalid JSON JSON parse error: Expecting ',' delimiter: line 22 column 14 (char 1533)Prompt: Load 1A6M with the protein as a grey cartoon. Show the heme and the proximal histidine as ball-and-stick and measure the distance from the heme iron to the histidine's coordinating nitrogen.
Parser: JSON parse error: Expecting ',' delimiter: line 22 column 14 (char 1533)
{"root": {"kind": "root", "children": [
{"kind": "download", "params": {"url": "https://files.rcsb.org/download/1a6m.cif"},
"children": [
{"kind": "parse", "params": {"format": "mmcif"}, "children": [
{"kind": "structure", "params": {"type": "model"}, "children": [
{"kind": "component", "params": {"selector": "polymer"}, "children": [
{"kind": "representation", "params": {"type": "cartoon"}, "children": [
{"kind": "color", "params": {"color": "gray"}}]}]},
{"kind": "component", "params": {"selector": {"auth_asym_id": "A", "label_comp_id": "HEM"}}, "children": [
{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [
{"kind": "color", "params": {"color": "orange"}}]}]},
{"kind": "component", "params": {"selector": {"auth_asym_id": "A", "auth_seq_id": 154, "label_atom_id": "NA"}}, "children": [
{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [
{"kind": "color", "params": {"color": "red"}}]}]},
{"kind": "primitives", "params": {"color": "blue", "label_color": "blue", "opacity": 0.7}, "children": [
{"kind": "primitive", "params": {"kind": "distance_measurement",
"start": {"auth_asym_id": "A", "label_comp_id": "HEM", "label_atom_id": "FE"},
"end": {"auth_asym_id": "A", "auth_seq_id": 154, "label_atom_id": "NA"},
"radius": 0.05,
"dash_length": 0.1,
"label_template": "{{distance}} Å"}}]}
]}]}]}]}]}]}int-003 invalid JSON JSON parse error: Expecting ',' delimiter: line 31 column 14 (char 2289)Prompt: In trypsin (3PTB), show the protein as a grey cartoon and the catalytic triad (His57, Asp102, Ser195) as ball-and-stick. Draw the two triad hydrogen bonds as dashed lines with their lengths.
Parser: JSON parse error: Expecting ',' delimiter: line 31 column 14 (char 2289)
{"root": {"kind": "root", "children": [
{"kind": "download", "params": {"url": "https://files.rcsb.org/download/3ptb.cif"},
"children": [
{"kind": "parse", "params": {"format": "mmcif"}, "children": [
{"kind": "structure", "params": {"type": "model"}, "children": [
{"kind": "component", "params": {"selector": "protein"}, "children": [
{"kind": "representation", "params": {"type": "cartoon"}, "children": [
{"kind": "color", "params": {"color": "grey"}}]}],
"custom": {"molstar_show_non_covalent_interactions": true, "molstar_non_covalent_interactions_radius_ang": 5}},
{"kind": "component", "params": {"selector": {"auth_asym_id": "A", "auth_seq_id": 57, "label_comp_id": "HIS"}},
"children": [
{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [
{"kind": "color", "params": {"color": "orange"}}]}]},
{"kind": "component", "params": {"selector": {"auth_asym_id": "A", "auth_seq_id": 102, "label_comp_id": "ASP"}},
"children": [
{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [
{"kind": "color", "params": {"color": "orange"}}]}]},
{"kind": "component", "params": {"selector": {"auth_asym_id": "A", "auth_seq_id": 195, "label_comp_id": "SER"}},
"children": [
{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [
{"kind": "color", "params": {"color": "orange"}}]}]},
{"kind": "primitives", "params": {"color": "blue", "label_color": "blue", "opacity": 0.7}, "children": [
{"kind": "primitive", "params": {"kind": "distance_measurement",
"start": {"auth_asym_id": "A", "auth_seq_id": 57, "label_atom_id": "ND1"},
"end": {"auth_asym_id": "A", "auth_seq_id": 102, "label_atom_id": "OD1"},
"radius": 0.05, "dash_length": 0.1, "label_template": "{{distance}}" }},
{"kind": "primitive", "params": {"kind": "distance_measurement",
"start": {"auth_asym_id": "A", "auth_seq_id": 102, "label_atom_id": "OD2"},
"end": {"auth_asym_id": "A", "auth_seq_id": 195, "label_atom_id": "OG"},
"radius": 0.05, "dash_length": 0.1, "label_template": "{{distance}}" }}]}
]}]}]}]}]}int-004 invalid JSON JSON parse error: Expecting ',' delimiter: line 15 column 1 (char 1037)Prompt: Load 1A6M with the protein as a grey cartoon and show all the non-covalent interactions (hydrogen bonds, metal contacts) around the bound oxygen molecule.
Parser: JSON parse error: Expecting ',' delimiter: line 15 column 1 (char 1037)
{"root": {"kind": "root", "children": [
{"kind": "download", "params": {"url": "https://files.rcsb.org/download/1a6m.cif"},
"children": [
{"kind": "parse", "params": {"format": "mmcif"}, "children": [
{"kind": "structure", "params": {"type": "model"}, "children": [
{"kind": "component", "params": {"selector": "protein"}, "children": [
{"kind": "representation", "params": {"type": "cartoon"}, "children": [
{"kind": "color", "params": {"color": "gray"}}]}],
"custom": {"molstar_show_non_covalent_interactions": true, "molstar_non_covalent_interactions_radius_ang": 5}},
{"kind": "component", "params": {"selector": {"auth_asym_id": "A", "auth_seq_id": 157, "label_comp_id": "OXY"}}, "children": [
{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [
{"kind": "color", "params": {"color": "red"}}]}],
"custom": {"molstar_show_non_covalent_interactions": true, "molstar_non_covalent_interactions_radius_ang": 5}}
]}]}]}]}
]}int-005 invalid JSON JSON parse error: Expecting ',' delimiter: line 26 column 14 (char 2101)Prompt: Show trypsin 3PTB as a grey cartoon and display the interactions between the benzamidine inhibitor and the protein.
Parser: JSON parse error: Expecting ',' delimiter: line 26 column 14 (char 2101)
{"root": {"kind": "root", "children": [
{"kind": "download", "params": {"url": "https://files.rcsb.org/download/3ptb.cif"},
"children": [
{"kind": "parse", "params": {"format": "mmcif"}, "children": [
{"kind": "structure", "params": {"type": "model"}, "children": [
{"kind": "component", "params": {"selector": "polymer"}, "children": [
{"kind": "representation", "params": {"type": "cartoon"}, "children": [
{"kind": "color", "params": {"color": "gray"}}]}]},
{"kind": "component", "params": {"selector": {"auth_asym_id": "A", "auth_seq_id": 1, "label_comp_id": "BEN"}}, "children": [
{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [
{"kind": "color", "params": {"color": "blue"}}]}]},
{"kind": "component", "params": {"selector": {"auth_asym_id": "A", "auth_seq_id": 480, "label_comp_id": "CA"}}, "children": [
{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [
{"kind": "color", "params": {"color": "red"}}]}]},
{"kind": "component", "params": {"selector": "water"}, "children": [
{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [
{"kind": "color", "params": {"color": "lightblue"}}]}]},
{"kind": "component", "params": {"selector": "ligand"}, "children": [
{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [
{"kind": "color", "params": {"color": "orange"}}]}]},
{"kind": "component", "params": {"selector": {"auth_asym_id": "A", "auth_seq_id": 1, "label_comp_id": "BEN"}}, "children": [
{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [
{"kind": "color", "params": {"color": "orange"}}]}]},
{"kind": "component", "params": {"selector": {"auth_asym_id": "A", "auth_seq_id": 1, "label_comp_id": "BEN"}}, "children": [
{"kind": "custom", "params": {"molstar_show_non_covalent_interactions": true, "molstar_non_covalent_interactions_radius_ang": 5}}]}
]}]}]}]}]}int-006 invalid JSON JSON parse error: Expecting ',' delimiter: line 23 column 4 (char 1172)Prompt: Load haemoglobin 1HHO; show the protein as a 50% transparent surface and the heme groups as ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 23 column 4 (char 1172)
{"root": {"kind": "root", "children": [
{"kind": "download", "params": {"url": "https://files.rcsb.org/download/1hho.cif"},
"children": [
{"kind": "parse", "params": {"format": "mmcif"}, "children": [
{"kind": "structure", "params": {"type": "model"}, "children": [
{"kind": "component", "params": {"selector": "protein"}, "children": [
{"kind": "representation", "params": {"type": "surface", "size_factor": 1.0}, "children": [
{"kind": "opacity", "params": {"opacity": 0.5}},
{"kind": "color", "params": {"color": "steelblue"}}
]}
]},
{"kind": "component", "params": {"selector": {"auth_asym_id": "A", "auth_seq_id": 143}}, "children": [
{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [
{"kind": "color", "params": {"color": "red"}}
]}
]},
{"kind": "component", "params": {"selector": {"auth_asym_id": "B", "auth_seq_id": 147}}, "children": [
{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [
{"kind": "color", "params": {"color": "red"}}
]}
]}
]}]
]}
]}}res-cftr invalid JSON JSON parse error: Expecting ',' delimiter: line 22 column 1 (char 1255)Prompt: show me the CFTR channel
Parser: JSON parse error: Expecting ',' delimiter: line 22 column 1 (char 1255)
{"root": {"kind": "root", "children": [
{"kind": "download", "params": {"url": "https://files.rcsb.org/download/9MXL.cif"},
"children": [
{"kind": "parse", "params": {"format": "mmcif"}, "children": [
{"kind": "structure", "params": {"type": "model"}, "children": [
{"kind": "component", "params": {"selector": "protein"}, "children": [
{"kind": "representation", "params": {"type": "cartoon"}, "children": [
{"kind": "color", "params": {"color": "steelblue", "custom": {"molstar_color_theme_name": "sequence-id"}}}
]},
{"kind": "representation", "params": {"type": "ball_and_stick", "size_factor": 0.5}, "children": [
{"kind": "color", "params": {"color": "orange", "selector": {"auth_asym_id": "A", "label_comp_id": "CL"}}}
]}
]},
{"kind": "component", "params": {"selector": "ligand"}, "children": [
{"kind": "representation", "params": {"type": "ball_and_stick", "size_factor": 0.5}, "children": [
{"kind": "color", "params": {"color": "red"}}
]}
]},
{"kind": "label", "params": {"text": "CFTR (P13569)", "position": [0, 0, 0], "label_size": 0.5}},
{"kind": "focus", "params": {"radius": 5.0}}
]}]}]}]}
]}}res-pcsk9 invalid JSON JSON parse error: Expecting ',' delimiter: line 30 column 1 (char 1475)Prompt: show the structure of PCSK9
Parser: JSON parse error: Expecting ',' delimiter: line 30 column 1 (char 1475)
{"root": {"kind": "root", "children": [
{"kind": "download", "params": {"url": "https://files.rcsb.org/download/7S5H.cif"},
"children": [
{"kind": "parse", "params": {"format": "mmcif"}, "children": [
{"kind": "structure", "params": {"type": "model"}, "children": [
{"kind": "component", "params": {"selector": "protein"}, "children": [
{"kind": "representation", "params": {"type": "cartoon", "size_factor": 1.0}, "children": [
{"kind": "color", "params": {"color": "blue"}}
]}
]},
{"kind": "component", "params": {"selector": {"auth_asym_id": "A", "auth_seq_id": 1}}, "children": [
{"kind": "representation", "params": {"type": "ball_and_stick", "size_factor": 1.2}, "children": [
{"kind": "color", "params": {"color": "red"}}
]}
]},
{"kind": "component", "params": {"selector": {"auth_asym_id": "B", "auth_seq_id": 1}}, "children": [
{"kind": "representation", "params": {"type": "ball_and_stick", "size_factor": 1.2}, "children": [
{"kind": "color", "params": {"color": "red"}}
]}
]},
{"kind": "component", "params": {"selector": "ligand"}, "children": [
{"kind": "representation", "params": {"type": "ball_and_stick", "size_factor": 1.2}, "children": [
{"kind": "color", "params": {"color": "orange"}}
]}
]},
{"kind": "focus", "params": {"radius": 5.0}}
]}]}
]}
]}
]}}res-pde5a invalid JSON JSON parse error: Expecting ',' delimiter: line 78 column 99 (char 6759)Prompt: I wanna see a structure of PDE5A
Parser: JSON parse error: Expecting ',' delimiter: line 78 column 99 (char 6759)
{"root": {"kind": "root", "children": [
{"kind": "download", "params": {"url": "https://files.rcsb.org/download/1TBF.cif"},
"children": [
{"kind": "parse", "params": {"format": "mmcif"}, "children": [
{"kind": "structure", "params": {"type": "model"}, "children": [
{"kind": "component", "params": {"selector": {"auth_asym_id": "A"}}, "children": [
{"kind": "representation", "params": {"type": "cartoon"}, "children": [
{"kind": "color", "params": {"color": "steelblue"}}]}]},
{"kind": "component", "params": {"selector": {"auth_asym_id": "A", "label_comp_id": "FE2"}}, "children": [
{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [
{"kind": "color", "params": {"color": "red"}}]}]},
{"kind": "component", "params": {"selector": {"auth_asym_id": "A", "label_comp_id": "D8E"}}, "children": [
{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [
{"kind": "color", "params": {"color": "orange"}}]}]},
{"kind": "component", "params": {"selector": {"auth_asym_id": "A", "label_comp_id": "H8B"}}, "children": [
{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [
{"kind": "color", "params": {"color": "green"}}]}]},
{"kind": "component", "params": {"selector": {"auth_asym_id": "A", "label_comp_id": "D13"}}, "children": [
{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [
{"kind": "color", "params": {"color": "purple"}}]}]},
{"kind": "component", "params": {"selector": {"auth_asym_id": "A", "label_comp_id": "D14"}}, "children": [
{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [
{"kind": "color", "params": {"color": "cyan"}}]}]},
{"kind": "component", "params": {"selector": {"auth_asym_id": "A", "label_comp_id": "D15"}}, "children": [
{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [
{"kind": "color", "params": {"color": "magenta"}}]}]},
{"kind": "component", "params": {"selector": {"auth_asym_id": "A", "label_comp_id": "D16"}}, "children": [
{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [
{"kind": "color", "params": {"color": "brown"}}]}]},
{"kind": "component", "params": {"selector": {"auth_asym_id": "A", "label_comp_id": "D17"}}, "children": [
{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [
{"kind": "color", "params": {"color": "pink"}}]}]},
{"kind": "component", "params": {"selector": {"auth_asym_id": "A", "label_comp_id": "D18"}}, "children": [
{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [
{"kind": "color", "params": {"color": "lime"}}]}]},
{"kind": "component", "params": {"selector": {"auth_asym_id": "A", "label_comp_id": "D19"}}, "children": [
{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [
{"kind": "color", "params": {"color": "gold"}}]}]},
{"kind": "component", "params": {"selector": {"auth_asym_id": "A", "label_comp_id": "D20"}}, "children": [
{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [
{"kind": "color", "params": {"color": "indigo"}}]}]},
{"kind": "component", "params": {"selector": {"auth_asym_id": "A", "label_comp_id": "D21"}}, "children": [
{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [
{"kind": "color", "params": {"color": "teal"}}]}]},
{"kind": "component", "params": {"selector": {"auth_asym_id": "A", "label_comp_id": "D22"}}, "children": [
{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [
{"kind": "color", "params": {"color": "crimson"}}]}]},
{"kind": "compon
… 2,775 more characters; full text in failures_data.jsongen-focus-1cbs invalid MVS Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_sourcePrompt: Load 1CBS; grey cartoon protein, magenta ball-and-stick ligands, and focus the camera on the ligand.
Mol* validator:
Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_source", "primitives", "primitives_from_uri", "volume", "volume_representation"
{
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/1cbs.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model"
},
"children": [
{
"kind": "component",
"params": {
"selector": "polymer"
},
"children": [
{
"kind": "representation",
"params": {
"type": "cartoon"
},
"children": [
{
"kind": "color",
"params": {
"color": "gray"
}
}
]
}
]
},
{
"kind": "component",
"params": {
"selector": {
"auth_asym_id": "A",
"auth_seq_id": 200,
"label_comp_id": "REA"
}
},
"children": [
{
"kind": "representation",
"params": {
"type": "ball_and_stick"
},
"children": [
{
"kind": "color",
"params": {
"color": "magenta"
}
}
]
}
]
},
{
"kind": "focus",
"params": {
"radius": 2.5
}
}
]
}
]
}
]
}
]
}
}gen-focus-3ptb invalid MVS Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_sourcePrompt: Load 3PTB; grey cartoon protein, magenta ball-and-stick ligands, and focus the camera on the ligand.
Mol* validator:
Node of kind "focus" cannot appear as a child of "structure". Allowed parents for "focus" are: "root", "component", "component_from_uri", "component_from_source", "primitives", "primitives_from_uri", "volume", "volume_representation"
{
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/3ptb.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model"
},
"children": [
{
"kind": "component",
"params": {
"selector": "protein"
},
"children": [
{
"kind": "representation",
"params": {
"type": "cartoon"
},
"children": [
{
"kind": "color",
"params": {
"color": "gray"
}
}
]
}
]
},
{
"kind": "component",
"params": {
"selector": {
"auth_asym_id": "A",
"auth_seq_id": 1
}
},
"children": [
{
"kind": "representation",
"params": {
"type": "ball_and_stick"
},
"children": [
{
"kind": "color",
"params": {
"color": "magenta"
}
}
]
}
]
},
{
"kind": "component",
"params": {
"selector": {
"auth_asym_id": "A",
"auth_seq_id": 480
}
},
"children": [
{
"kind": "representation",
"params": {
"type": "ball_and_stick"
},
"children": [
{
"kind": "color",
"params": {
"color": "magenta"
}
}
]
}
]
},
{
"kind": "focus",
"params": {
"radius": 2.0,
"target": {
"auth_asym_id": "A",
"auth_seq_id": 1
}
}
},
{
"kind": "focus",
"params": {
"radius": 2.0,
"target": {
"auth_asym_id": "A",
"auth_seq_id": 480
}
}
}
]
}
]
}
]
}
]
}
}mvs-003 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 672 (char 671)Prompt: Load hen egg-white lysozyme (1LYZ) as a grey cartoon, and show the two catalytic residues Glu35 and Asp52 on chain A as red ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 672 (char 671)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1lyz.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":[{"auth_asym_id":"A","auth_seq_id":35},{"auth_asym_id":"A","auth_seq_id":52}]},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"red"}}]}]}]}]}]}}mvs-004 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 683 (char 682)Prompt: Load HIV-1 protease (1HVR); protein as grey cartoon, the bound inhibitor as magenta ball-and-stick, and focus the camera on the inhibitor.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 683 (char 682)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1hvr.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon","size_factor":1.0},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"label_comp_id":"XK2"}},"children":[{"kind":"representation","params":{"type":"ball_and_stick","size_factor":1.0},"children":[{"kind":"color","params":{"color":"magenta"}}]},{"kind":"focus","params":{}}]}]}}]}]}}mvs-005 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 429 (char 428)Prompt: Load insulin (4INS) and render the protein as a steel-blue molecular surface.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 429 (char 428)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/4INS.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"surface"},"children":[{"kind":"color","params":{"color":"steelblue"}}]}]}]}]}]}]}clinvar-1tup-D281 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 735 (char 734)Prompt: In p53 (PDB 1TUP), chain A, highlight the residue affected by the pathogenic ClinVar variant D281Y as red ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 735 (char 734)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1tup.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model","model_index":0},"children":[{"kind":"component","params":{"selector":{"auth_asym_id":"A"}},"children":[{"kind":"representation","params":{"type":"cartoon","size_factor":1.0},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"A","auth_seq_id":281}},"children":[{"kind":"representation","params":{"type":"ball_and_stick","size_factor":1.0},"children":[{"kind":"color","params":{"color":"red"}}]}]},{"kind":"focus","params":{"radius":3}}]}]}]}}clinvar-1tup-N239 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 459 (char 458)Prompt: In p53 (PDB 1TUP), chain A, highlight the residue affected by the pathogenic ClinVar variant N239T as red ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 459 (char 458)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1TUP.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":{"auth_asym_id":"A","auth_seq_id":239}},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"red"}}]}]}]}]}]}]}hotspots-1tup invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 645 (char 644)Prompt: In p53 (PDB 1TUP), chain A, highlight the 6 mutational hotspot residues — the positions carrying the most pathogenic ClinVar variants — as red spheres.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 645 (char 644)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1tup.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":[{"auth_asym_id":"A","auth_seq_id":215},{"auth_asym_id":"A","auth_seq_id":109},{"auth_asym_id":"A","auth_seq_id":281},{"auth_asym_id":"A","auth_seq_id":110},{"auth_asym_id":"A","auth_seq_id":239},{"auth_asym_id":"A","auth_seq_id":241}]},"children":[{"kind":"representation","params":{"type":"spacefill"},"children":[{"kind":"color","params":{"color":"red"}}]}]}]}}]}]}}named-1tup-248 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 458 (char 457)Prompt: In p53 (PDB 1TUP), chain A, select the residue at canonical UniProt position 248 and show it as blue ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 458 (char 457)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1tup.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":{"auth_asym_id":"A","auth_seq_id":248}},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"blue"}}]}]}]}]}]}}gen-cartoon-1cbs invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 424 (char 423)Prompt: Load cellular retinoic-acid binding protein (1CBS) and show the protein as a purple cartoon.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 424 (char 423)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1cbs.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"protein"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"purple"}}]}]}]}]}]}}gen-cartoon-2hhb invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 422 (char 421)Prompt: Load deoxyhaemoglobin (2HHB) and show the protein as a teal cartoon.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 422 (char 421)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/2hhb.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"protein"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"teal"}}]}]}]}]}]}}gen-cartoon-4ins invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 422 (char 421)Prompt: Load insulin (4INS) and show the protein as a blue cartoon.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 422 (char 421)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/4ins.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"blue"}}]}]}]}]}]}}gen-chain-1cbs invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 611 (char 610)Prompt: Load 1CBS; show everything as a grey cartoon, then colour chain A purple.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 611 (char 610)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1cbs.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"A"}},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"purple"}}]}]}]}]}]}}gen-chain-1hho invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 608 (char 607)Prompt: Load 1HHO; show everything as a grey cartoon, then colour chain A red.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 608 (char 607)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1hho.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"A"}},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"red"}}]}]}]}]}]}}gen-chain-1lyz invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 606 (char 605)Prompt: Load 1LYZ; show everything as a grey cartoon, then colour chain A green.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 606 (char 605)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1lyz.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"all"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"A"}},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"green"}}]}]}]}]}]}}gen-chain-3ptb invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 611 (char 610)Prompt: Load 3PTB; show everything as a grey cartoon, then colour chain A orange.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 611 (char 610)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/3ptb.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"A"}},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"orange"}}]}]}]}]}]}}gen-chain-4ins invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 497 (char 496)Prompt: Load 4INS; show everything as a grey cartoon, then colour chain B blue.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 497 (char 496)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/4ins.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}},{"kind":"color","params":{"color":"blue","selector":{"auth_asym_id":"B"}}}]}]}]}]}]}}gen-focus-1cbs invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 636 (char 635)Prompt: Load 1CBS; grey cartoon protein, magenta ball-and-stick ligands, and focus the camera on the ligand.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 636 (char 635)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1cbs.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"protein"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":"ligand"},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"magenta"}}]},{"kind":"focus","params":{}}]}]}]}]}}gen-focus-1hho invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 810 (char 809)Prompt: Load 1HHO; grey cartoon protein, magenta ball-and-stick ligands, and focus the camera on the ligand.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 810 (char 809)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1hho.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model","model_index":0},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon","size_factor":1},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":"ligand"},"children":[{"kind":"representation","params":{"type":"ball_and_stick","size_factor":1},"children":[{"kind":"color","params":{"color":"magenta"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"A","auth_seq_id":150,"auth_comp_id":"OXY"}},"children":[{"kind":"focus","params":{"radius":5}}]}]}]}]}}gen-focus-2hhb invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 624 (char 623)Prompt: Load 2HHB; grey cartoon protein, magenta ball-and-stick ligands, and focus the camera on the ligand.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 624 (char 623)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/2hhb.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"protein"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":"ligand"},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"magenta"}}]},{"kind":"focus"}]}]}]}]}}gen-focus-3ptb invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 624 (char 623)Prompt: Load 3PTB; grey cartoon protein, magenta ball-and-stick ligands, and focus the camera on the ligand.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 624 (char 623)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/3ptb.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":"ligand"},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"magenta"}}]},{"kind":"focus"}]}]}]}]}}gen-ions-1hho invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 631 (char 630)Prompt: Load 1HHO; protein as grey cartoon, and show the ions as purple spheres.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 631 (char 630)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1hho.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"A","auth_seq_id":142}},"children":[{"kind":"representation","params":{"type":"spacefill"},"children":[{"kind":"color","params":{"color":"purple"}}]}]}]}]}]}}gen-ions-2hhb invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 649 (char 648)Prompt: Load 2HHB; protein as grey cartoon, and show the ions as purple spheres.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 649 (char 648)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/2hhb.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon","size_factor":1},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_comp_id":"PO4"}},"children":[{"kind":"representation","params":{"type":"spacefill","size_factor":1},"children":[{"kind":"color","params":{"color":"purple"}}]}]}]}]}]}]}gen-ions-3ptb invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 633 (char 632)Prompt: Load 3PTB; protein as grey cartoon, and show the ions as purple spheres.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 633 (char 632)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/3ptb.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"B","auth_comp_id":"CA"}},"children":[{"kind":"representation","params":{"type":"spacefill"},"children":[{"kind":"color","params":{"color":"purple"}}]}]}]}]}]}}gen-ions-4ins invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 598 (char 597)Prompt: Load 4INS; protein as grey cartoon, and show the ions as purple spheres.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 598 (char 597)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/4ins.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"protein"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":"ion"},"children":[{"kind":"representation","params":{"type":"spacefill"},"children":[{"kind":"color","params":{"color":"purple"}}]}]}]}]}]}}gen-ligands-1cbs invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 606 (char 605)Prompt: Load 1CBS; show the protein as a grey cartoon and the ligands as purple ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 606 (char 605)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1cbs.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":"ligand"},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"purple"}}]}]}]}]}]}}gen-ligands-2hhb invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 604 (char 603)Prompt: Load 2HHB; show the protein as a grey cartoon and the ligands as teal ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 604 (char 603)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/2hhb.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":"ligand"},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"teal"}}]}]}]}]}]}}gen-ligands-3ptb invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 606 (char 605)Prompt: Load 3PTB; show the protein as a grey cartoon and the ligands as orange ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 606 (char 605)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/3ptb.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"protein"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":"ligand"},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"orange"}}]}]}]}]}]}}gen-range-1cbs invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 660 (char 659)Prompt: Load 1CBS; protein as grey cartoon, and show residues 20-60 of chain A as orange ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 660 (char 659)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1cbs.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"A","beg_auth_seq_id":20,"end_auth_seq_id":60}},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"orange"}}]}]}]}]}]}}gen-range-1hho invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 660 (char 659)Prompt: Load 1HHO; protein as grey cartoon, and show residues 30-90 of chain A as orange ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 660 (char 659)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1hho.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"A","beg_auth_seq_id":30,"end_auth_seq_id":90}},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"orange"}}]}]}]}]}]}}gen-range-1lyz invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 660 (char 659)Prompt: Load 1LYZ; protein as grey cartoon, and show residues 40-80 of chain A as orange ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 660 (char 659)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1lyz.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"A","beg_auth_seq_id":40,"end_auth_seq_id":80}},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"orange"}}]}]}]}]}]}}gen-range-2hhb invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 660 (char 659)Prompt: Load 2HHB; protein as grey cartoon, and show residues 10-70 of chain B as orange ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 660 (char 659)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/2hhb.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"B","beg_auth_seq_id":10,"end_auth_seq_id":70}},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"orange"}}]}]}]}]}]}}gen-range-3ptb invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 661 (char 660)Prompt: Load 3PTB; protein as grey cartoon, and show residues 50-110 of chain A as orange ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 661 (char 660)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/3ptb.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"A","beg_auth_seq_id":50,"end_auth_seq_id":110}},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"orange"}}]}]}]}]}]}}gen-range-4ins invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 675 (char 674)Prompt: Load 4INS; protein as grey cartoon, and show residues 5-25 of chain B as orange ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 675 (char 674)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/4ins.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model","model_index":0},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"B","beg_auth_seq_id":5,"end_auth_seq_id":25}},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"orange"}}]}]}]}]}]}}gen-surface-1cbs invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 427 (char 426)Prompt: Load 1CBS; render the protein as a steelblue molecular surface.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 427 (char 426)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1cbs.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"surface"},"children":[{"kind":"color","params":{"color":"steelblue"}}]}]}]}]}]}}gen-surface-1lyz invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 423 (char 422)Prompt: Load 1LYZ; render the protein as a khaki molecular surface.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 423 (char 422)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1lyz.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"surface"},"children":[{"kind":"color","params":{"color":"khaki"}}]}]}]}]}]}}gen-surface-2hhb invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 424 (char 423)Prompt: Load 2HHB; render the protein as a salmon molecular surface.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 424 (char 423)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/2hhb.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"surface"},"children":[{"kind":"color","params":{"color":"salmon"}}]}]}]}]}]}}gen-surface-3ptb invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 422 (char 421)Prompt: Load 3PTB; render the protein as a plum molecular surface.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 422 (char 421)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/3ptb.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"protein"},"children":[{"kind":"representation","params":{"type":"surface"},"children":[{"kind":"color","params":{"color":"plum"}}]}]}]}]}]}}grd-disulfide-3ptb invalid JSON no JSON object found in outputPrompt: Load 3PTB; protein as grey cartoon, and highlight the disulfide-bonded cysteines as yellow ball-and-stick.
Parser: no JSON object found in output
The model returned an empty response.
grd-disulfide-4ins invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 683 (char 682)Prompt: Load 4INS; protein as grey cartoon, and highlight the disulfide-bonded cysteines as yellow ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 683 (char 682)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/4ins.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":[{"auth_asym_id":"A","auth_comp_id":"CYS"},{"auth_asym_id":"B","auth_comp_id":"CYS"}]},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"yellow"}}]}]}]}]}]}}grd-ligand-1cbs-rea invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 672 (char 671)Prompt: Load 1CBS; show the protein as a grey cartoon and the REA as orange ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 672 (char 671)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1cbs.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon","size_factor":1},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"A","label_comp_id":"REA"}},"children":[{"kind":"representation","params":{"type":"ball_and_stick","size_factor":1},"children":[{"kind":"color","params":{"color":"orange"}}]}]}]}]}]}}grd-ligand-1hho-hem invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 620 (char 619)Prompt: Load 1HHO; show the protein as a grey cartoon and the HEM as orange ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 620 (char 619)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1hho.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"protein"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_comp_id":"HEM"}},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"orange"}}]}]}]}]}]}}grd-ligand-2hhb-hem invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 620 (char 619)Prompt: Load 2HHB; show the protein as a grey cartoon and the HEM as orange ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 620 (char 619)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/2hhb.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_comp_id":"HEM"}},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"orange"}}]}]}]}]}]}}grd-ligand-3ptb-ca invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 636 (char 635)Prompt: Load 3PTB; show the protein as a grey cartoon and the CA as orange ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 636 (char 635)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/3ptb.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"A","auth_seq_id":480}},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"orange"}}]}]}]}]}]}}grd-ligand-4ins-zn invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 651 (char 650)Prompt: Load 4INS; show the protein as a grey cartoon and the ZN as orange ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 651 (char 650)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/4ins.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"protein"},"children":[{"kind":"representation","params":{"type":"cartoon","size_factor":1},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_comp_id":"ZN"}},"children":[{"kind":"representation","params":{"type":"ball_and_stick","size_factor":1},"children":[{"kind":"color","params":{"color":"orange"}}]}]}]}]}]}}int-001 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 1024 (char 1023)Prompt: In oxymyoglobin 1A6M, show the protein as a grey cartoon, His64 and the bound O2 as ball-and-stick, and draw the hydrogen bond from His64 NE2 to the O2 molecule's terminal oxygen (atom O2) as a dashed line labelled with its length.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 1024 (char 1023)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1a6m.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"protein"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":[{"auth_asym_id":"A","auth_seq_id":64},{"auth_asym_id":"A","auth_seq_id":157}]},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"white"}}]}]},{"kind":"primitives","params":{"color":"yellow","label_color":"yellow"},"children":[{"kind":"primitive","params":{"kind":"distance_measurement","start":{"auth_asym_id":"A","auth_seq_id":64,"label_atom_id":"NE2"},"end":{"auth_asym_id":"A","auth_seq_id":157,"label_atom_id":"O2"},"radius":0.06,"dash_length":0.15,"label_template":"{{distance}} Å"}}]}]}]}]}}int-002 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 995 (char 994)Prompt: Load 1A6M with the protein as a grey cartoon. Show the heme and the proximal histidine as ball-and-stick and measure the distance from the heme iron to the histidine's coordinating nitrogen.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 995 (char 994)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1a6m.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":[{"label_comp_id":"HEM"},{"auth_asym_id":"A","auth_seq_id":93}]},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"orange"}}]}]},{"kind":"primitives","params":{"color":"yellow","label_color":"yellow"},"children":[{"kind":"primitive","params":{"kind":"distance_measurement","start":{"label_comp_id":"HEM","label_atom_id":"FE"},"end":{"auth_asym_id":"A","auth_seq_id":93,"label_atom_id":"NE2"},"radius":0.06,"dash_length":0.15,"label_template":"{{distance}} Å"}}]}]}]}]}}int-003 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 700 (char 699)Prompt: In trypsin (3PTB), show the protein as a grey cartoon and the catalytic triad (His57, Asp102, Ser195) as ball-and-stick. Draw the two triad hydrogen bonds as dashed lines with their lengths.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 700 (char 699)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/3ptb.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model","model_index":0},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon","size_factor":1.0},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":[{"auth_asym_id":"A","auth_seq_id":57},{"auth_asym_id":"A","auth_seq_id":102},{"auth_asym_id":"A","auth_seq_id":195}]},"children":[{"kind":"representation","params":{"type":"ball_and_stick","size_factor":1.0},"children":[{"kind":"colorint-005 invalid JSON no JSON object found in outputPrompt: Show trypsin 3PTB as a grey cartoon and display the interactions between the benzamidine inhibitor and the protein.
Parser: no JSON object found in output
The model returned an empty response.
int-006 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 668 (char 667)Prompt: Load haemoglobin 1HHO; show the protein as a 50% transparent surface and the heme groups as ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 668 (char 667)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1hho.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"surface"},"children":[{"kind":"color","params":{"color":"silver"}},{"kind":"opacity","params":{"opacity":0.5}}]}]},{"kind":"component","params":{"selector":{"auth_comp_id":"HEM"}},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"orange"}}]}]}]}]}]}]}res-cftr invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 420 (char 419)Prompt: show me the CFTR channel
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 420 (char 419)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/9mxl.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]}]}]}},{"kind":"focus","params":{"radius":20}}]}}res-lysozyme invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 422 (char 421)Prompt: Show me hen egg white lysozyme
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 422 (char 421)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/2vb1.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]}]}]}]}}res-myoglobin invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 626 (char 625)Prompt: Show me sperm whale myoglobin
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 626 (char 625)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/5yce.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"label_comp_id":"HEM"}},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"orange"}}]}]}]}]},"kind":"focus","params":{"radius":20}}]}}res-pcsk9 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 422 (char 421)Prompt: show the structure of PCSK9
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 422 (char 421)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/7s5h.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"protein"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]}]}]}]}}res-pde5a invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 603 (char 602)Prompt: I wanna see a structure of PDE5A
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 603 (char 602)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1tbf.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":"ligand"},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"orange"}}]}]}]}]]}]}mvs-001 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 424 (char 423)Prompt: Load haemoglobin (PDB 1HHO) and show the protein as a grey cartoon.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 424 (char 423)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1hho.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"protein"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]}]}]}]}]}]}mvs-002 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 622 (char 621)Prompt: Load haemoglobin (1HHO); show the protein as a grey cartoon and the heme groups as orange ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 622 (char 621)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1HHO.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"protein"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_comp_id":"HEM"}},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"orange"}}]}]}]}]}]}]}]}mvs-003 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 674 (char 673)Prompt: Load hen egg-white lysozyme (1LYZ) as a grey cartoon, and show the two catalytic residues Glu35 and Asp52 on chain A as red ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 674 (char 673)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1lyz.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"protein"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":[{"auth_asym_id":"A","auth_seq_id":35},{"auth_asym_id":"A","auth_seq_id":52}]},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"red"}}]}]}]}]}]}]}]}]}}mvs-004 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 626 (char 625)Prompt: Load HIV-1 protease (1HVR); protein as grey cartoon, the bound inhibitor as magenta ball-and-stick, and focus the camera on the inhibitor.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 626 (char 625)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1hvr.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":"ligand"},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"magenta"}}]},{"kind":"focus"}]}]}]}]}]}]}"}]}clinvar-1tup-D281 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 459 (char 458)Prompt: In p53 (PDB 1TUP), chain A, highlight the residue affected by the pathogenic ClinVar variant D281Y as red ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 459 (char 458)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1tup.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":{"auth_asym_id":"A","auth_seq_id":281}},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"red"}}]}]}]}]}]}]}]}}clinvar-1tup-F109 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 459 (char 458)Prompt: In p53 (PDB 1TUP), chain A, highlight the residue affected by the pathogenic ClinVar variant F109V as red ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 459 (char 458)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1tup.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":{"auth_asym_id":"A","auth_seq_id":109}},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"red"}}]}]}]}]}]}]}]}}clinvar-1tup-N239 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 500 (char 499)Prompt: In p53 (PDB 1TUP), chain A, highlight the residue affected by the pathogenic ClinVar variant N239T as red ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 500 (char 499)
{"root": {"kind": "root", "children": [{"kind": "download", "params": {"url": "https://files.rcsb.org/download/1tup.cif"}, "children": [{"kind": "parse", "params": {"format": "mmcif"}, "children": [{"kind": "structure", "params": {"type": "model"}, "children": [{"kind": "component", "params": {"selector": {"auth_asym_id": "A", "auth_seq_id": 239}}, "children": [{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [{"kind": "color", "params": {"color": "red"}}]}]}]}]}]}]}]}clinvar-1tup-S215 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 636 (char 635)Prompt: In p53 (PDB 1TUP), chain A, highlight the residue affected by the pathogenic ClinVar variant S215T as red ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 636 (char 635)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1tup.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"protein"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"A","auth_seq_id":215}}, "children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"red"}}]}]}]}]}]}]}]}}clinvar-1tup-S241 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 460 (char 459)Prompt: In p53 (PDB 1TUP), chain A, highlight the residue affected by the pathogenic ClinVar variant S241Y as red ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 460 (char 459)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1tup.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":{"auth_asym_id":"A","auth_seq_id":241}}, "children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"red"}}]}]}]}]}]}]}]}hotspots-1tup invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 397 (char 396)Prompt: In p53 (PDB 1TUP), chain A, highlight the 6 mutational hotspot residues — the positions carrying the most pathogenic ClinVar variants — as red spheres.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 397 (char 396)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1tup.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":[{"auth_asym_id":"A","auth_seq_id":16},{"auth_asym_id":"A","auth_seq_id":17},{"auth_asym_id":"A","auth_seq_id":122},{"auth_asym_id":"A","auth_seq_id":146named-1tup-143 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 460 (char 459)Prompt: In p53 (PDB 1TUP), chain A, select the residue at canonical UniProt position 143 and show it as blue ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 460 (char 459)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1tup.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":{"auth_asym_id":"A","auth_seq_id":143}},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"blue"}}]}]}]}]}]}]}]}named-1tup-175 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 460 (char 459)Prompt: In p53 (PDB 1TUP), chain A, select the residue at canonical UniProt position 175 and show it as blue ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 460 (char 459)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1tup.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":{"auth_asym_id":"A","auth_seq_id":175}},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"blue"}}]}]}]}]}]}]}]}named-1tup-248 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 460 (char 459)Prompt: In p53 (PDB 1TUP), chain A, select the residue at canonical UniProt position 248 and show it as blue ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 460 (char 459)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1tup.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":{"auth_asym_id":"A","auth_seq_id":248}},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"blue"}}]}]}]}]}]}]}]}gen-cartoon-1cbs invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 464 (char 463)Prompt: Load cellular retinoic-acid binding protein (1CBS) and show the protein as a purple cartoon.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 464 (char 463)
{"root": {"kind": "root", "children": [{"kind": "download", "params": {"url": "https://files.rcsb.org/download/1cbs.cif"}, "children": [{"kind": "parse", "params": {"format": "mmcif"}, "children": [{"kind": "structure", "params": {"type": "model"}, "children": [{"kind": "component", "params": {"selector": "polymer"}, "children": [{"kind": "representation", "params": {"type": "cartoon"}, "children": [{"kind": "color", "params": {"color": "purple"}}]}]}]}]}]}]}]}gen-cartoon-1hho invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 461 (char 460)Prompt: Load haemoglobin (1HHO) and show the protein as a red cartoon.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 461 (char 460)
{"root": {"kind": "root", "children": [{"kind": "download", "params": {"url": "https://files.rcsb.org/download/1hho.cif"}, "children": [{"kind": "parse", "params": {"format": "mmcif"}, "children": [{"kind": "structure", "params": {"type": "model"}, "children": [{"kind": "component", "params": {"selector": "protein"}, "children": [{"kind": "representation", "params": {"type": "cartoon"}, "children": [{"kind": "color", "params": {"color": "red"}}]}]}]}]}]}]}]}gen-cartoon-1lyz invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 425 (char 424)Prompt: Load lysozyme (1LYZ) and show the protein as a green cartoon.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 425 (char 424)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1lyz.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"protein"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"green"}}]}]}]}]}]}]}]}gen-cartoon-2hhb invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 462 (char 461)Prompt: Load deoxyhaemoglobin (2HHB) and show the protein as a teal cartoon.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 462 (char 461)
{"root": {"kind": "root", "children": [{"kind": "download", "params": {"url": "https://files.rcsb.org/download/2hhb.cif"}, "children": [{"kind": "parse", "params": {"format": "mmcif"}, "children": [{"kind": "structure", "params": {"type": "model"}, "children": [{"kind": "component", "params": {"selector": "protein"}, "children": [{"kind": "representation", "params": {"type": "cartoon"}, "children": [{"kind": "color", "params": {"color": "teal"}}]}]}]}]}]}]}]}gen-cartoon-3ptb invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 464 (char 463)Prompt: Load trypsin (3PTB) and show the protein as a orange cartoon.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 464 (char 463)
{"root": {"kind": "root", "children": [{"kind": "download", "params": {"url": "https://files.rcsb.org/download/3ptb.cif"}, "children": [{"kind": "parse", "params": {"format": "mmcif"}, "children": [{"kind": "structure", "params": {"type": "model"}, "children": [{"kind": "component", "params": {"selector": "protein"}, "children": [{"kind": "representation", "params": {"type": "cartoon"}, "children": [{"kind": "color", "params": {"color": "orange"}}]}]}]}]}]}]}]}]}gen-cartoon-4ins invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 462 (char 461)Prompt: Load insulin (4INS) and show the protein as a blue cartoon.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 462 (char 461)
{"root": {"kind": "root", "children": [{"kind": "download", "params": {"url": "https://files.rcsb.org/download/4ins.cif"}, "children": [{"kind": "parse", "params": {"format": "mmcif"}, "children": [{"kind": "structure", "params": {"type": "model"}, "children": [{"kind": "component", "params": {"selector": "protein"}, "children": [{"kind": "representation", "params": {"type": "cartoon"}, "children": [{"kind": "color", "params": {"color": "blue"}}]}]}]}]}]}]}]}gen-chain-1cbs invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 501 (char 500)Prompt: Load 1CBS; show everything as a grey cartoon, then colour chain A purple.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 501 (char 500)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1cbs.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}},{"kind":"color","params":{"color":"purple"},"selector":{"auth_asym_id":"A"}}]}]}]}]}]}]}]}]}}gen-chain-1hho invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 610 (char 609)Prompt: Load 1HHO; show everything as a grey cartoon, then colour chain A red.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 610 (char 609)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1hho.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"A"}},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"red"}}]}]}]}]}]}]}]}gen-chain-1lyz invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 500 (char 499)Prompt: Load 1LYZ; show everything as a grey cartoon, then colour chain A green.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 500 (char 499)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1lyz.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}},{"kind":"color","params":{"selector":{"auth_asym_id":"A"},"color":"green"}}]}]}]}]}]}]}]}}gen-chain-2hhb invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 611 (char 610)Prompt: Load 2HHB; show everything as a grey cartoon, then colour chain B teal.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 611 (char 610)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/2hhb.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"B"}},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"teal"}}]}]}]}]}]}]}]}gen-chain-3ptb invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 614 (char 613)Prompt: Load 3PTB; show everything as a grey cartoon, then colour chain A orange.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 614 (char 613)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/3ptb.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"grey"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"A"}}, "children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"orange"}}]}]}]}]}]}]}]}gen-chain-4ins invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 667 (char 666)Prompt: Load 4INS; show everything as a grey cartoon, then colour chain B blue.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 667 (char 666)
{"root": {"kind": "root", "children": [{"kind": "download", "params": {"url": "https://files.rcsb.org/download/4ins.cif"}, "children": [{"kind": "parse", "params": {"format": "mmcif"}, "children": [{"kind": "structure", "params": {"type": "model"}, "children": [{"kind": "component", "params": {"selector": "polymer"}, "children": [{"kind": "representation", "params": {"type": "cartoon"}, "children": [{"kind": "color", "params": {"color": "gray"}}]}]}, {"kind": "component", "params": {"selector": {"auth_asym_id": "B"}}, "children": [{"kind": "representation", "params": {"type": "cartoon"}, "children": [{"kind": "color", "params": {"color": "blue"}}]}]}]}]}]}]}]}gen-focus-1cbs invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 668 (char 667)Prompt: Load 1CBS; grey cartoon protein, magenta ball-and-stick ligands, and focus the camera on the ligand.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 668 (char 667)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1cbs.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"A","auth_seq_id":200}},"children":[{"kind":"focus","params":{}},{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"magenta"}}]}]}]}]}]}]}]}gen-focus-3ptb invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 638 (char 637)Prompt: Load 3PTB; grey cartoon protein, magenta ball-and-stick ligands, and focus the camera on the ligand.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 638 (char 637)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/3ptb.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":"ligand"},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"magenta"}}]},{"kind":"focus","params":{}}]}]}]}]}]}]}]}}gen-ions-1hho invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 600 (char 599)Prompt: Load 1HHO; protein as grey cartoon, and show the ions as purple spheres.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 600 (char 599)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1HHO.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"protein"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":"ion"},"children":[{"kind":"representation","params":{"type":"spacefill"},"children":[{"kind":"color","params":{"color":"purple"}}]}]}]}]}]}]}]}gen-ions-2hhb invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 617 (char 616)Prompt: Load 2HHB; protein as grey cartoon, and show the ions as purple spheres.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 617 (char 616)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/2hhb.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_comp_id":"PO4"}},"children":[{"kind":"representation","params":{"type":"spacefill"},"children":[{"kind":"color","params":{"color":"purple"}}]}]}]}]}]}]}]}gen-ions-3ptb invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 635 (char 634)Prompt: Load 3PTB; protein as grey cartoon, and show the ions as purple spheres.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 635 (char 634)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/3ptb.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"grey"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"A","auth_comp_id":"CA"}},"children":[{"kind":"representation","params":{"type":"spacefill"},"children":[{"kind":"color","params":{"color":"purple"}}]}]}]}]}]}]}]}gen-ions-4ins invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 655 (char 654)Prompt: Load 4INS; protein as grey cartoon, and show the ions as purple spheres.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 655 (char 654)
{"root": {"kind": "root", "children": [{"kind": "download", "params": {"url": "https://files.rcsb.org/download/4ins.cif"}, "children": [{"kind": "parse", "params": {"format": "mmcif"}, "children": [{"kind": "structure", "params": {"type": "model"}, "children": [{"kind": "component", "params": {"selector": "polymer"}, "children": [{"kind": "representation", "params": {"type": "cartoon"}, "children": [{"kind": "color", "params": {"color": "grey"}}]}]}, {"kind": "component", "params": {"selector": "ion"}, "children": [{"kind": "representation", "params": {"type": "spacefill"}, "children": [{"kind": "color", "params": {"color": "purple"}}]}]}]}]}]}]}]}gen-ligands-1cbs invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 639 (char 638)Prompt: Load 1CBS; show the protein as a grey cartoon and the ligands as purple ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 639 (char 638)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1cbs.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"protein"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"A","auth_seq_id":200}}, "children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"purple"}}]}]}]}]}]}]}]}gen-ligands-1hho invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 660 (char 659)Prompt: Load 1HHO; show the protein as a grey cartoon and the ligands as red ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 660 (char 659)
{"root": {"kind": "root", "children": [{"kind": "download", "params": {"url": "https://files.rcsb.org/download/1hho.cif"}, "children": [{"kind": "parse", "params": {"format": "mmcif"}, "children": [{"kind": "structure", "params": {"type": "model"}, "children": [{"kind": "component", "params": {"selector": "polymer"}, "children": [{"kind": "representation", "params": {"type": "cartoon"}, "children": [{"kind": "color", "params": {"color": "gray"}}]}]}, {"kind": "component", "params": {"selector": "ligand"}, "children": [{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [{"kind": "color", "params": {"color": "red"}}]}]}]}]}]}]}]}gen-ligands-2hhb invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 610 (char 609)Prompt: Load 2HHB; show the protein as a grey cartoon and the ligands as teal ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 610 (char 609)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/2hhb.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":"nonpolymer"},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"teal"}}]}]}]}]}]}]}]}"}gen-ligands-3ptb invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 608 (char 607)Prompt: Load 3PTB; show the protein as a grey cartoon and the ligands as orange ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 608 (char 607)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/3ptb.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"grey"}}]}]},{"kind":"component","params":{"selector":"ligand"},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"orange"}}]}]}]}]}]}]}]}gen-range-1cbs invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 662 (char 661)Prompt: Load 1CBS; protein as grey cartoon, and show residues 20-60 of chain A as orange ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 662 (char 661)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1cbs.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"protein"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"A","beg_auth_seq_id":20,"end_auth_seq_id":60}},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"orange"}}]}]}]}]}]}]}]}gen-range-1hho invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 662 (char 661)Prompt: Load 1HHO; protein as grey cartoon, and show residues 30-90 of chain A as orange ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 662 (char 661)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1hho.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"protein"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"A","beg_auth_seq_id":30,"end_auth_seq_id":90}},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"orange"}}]}]}]}]}]}]}]}}gen-range-2hhb invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 663 (char 662)Prompt: Load 2HHB; protein as grey cartoon, and show residues 10-70 of chain B as orange ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 663 (char 662)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/2hhb.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"protein"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"B","beg_auth_seq_id":10,"end_auth_seq_id":70}}, "children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"orange"}}]}]}]}]}]}]}]}}gen-range-3ptb invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 664 (char 663)Prompt: Load 3PTB; protein as grey cartoon, and show residues 50-110 of chain A as orange ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 664 (char 663)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/3ptb.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"A","beg_auth_seq_id":50,"end_auth_seq_id":110}}, "children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"orange"}}]}]}]}]}]}]}]}]}gen-range-4ins invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 661 (char 660)Prompt: Load 4INS; protein as grey cartoon, and show residues 5-25 of chain B as orange ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 661 (char 660)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/4ins.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"protein"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"grey"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"B","beg_auth_seq_id":5,"end_auth_seq_id":25}},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"orange"}}]}]}]}]}]}]}]}]}}gen-surface-1cbs invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 429 (char 428)Prompt: Load 1CBS; render the protein as a steelblue molecular surface.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 429 (char 428)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1cbs.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"protein"},"children":[{"kind":"representation","params":{"type":"surface"},"children":[{"kind":"color","params":{"color":"steelblue"}}]}]}]}]}]}]}]}gen-surface-1hho invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 429 (char 428)Prompt: Load 1HHO; render the protein as a steelblue molecular surface.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 429 (char 428)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1hho.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"protein"},"children":[{"kind":"representation","params":{"type":"surface"},"children":[{"kind":"color","params":{"color":"steelblue"}}]}]}]}]}]}]}]}gen-surface-1lyz invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 425 (char 424)Prompt: Load 1LYZ; render the protein as a khaki molecular surface.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 425 (char 424)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1lyz.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"protein"},"children":[{"kind":"representation","params":{"type":"surface"},"children":[{"kind":"color","params":{"color":"khaki"}}]}]}]}]}]}]}]}]}}gen-surface-2hhb invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 426 (char 425)Prompt: Load 2HHB; render the protein as a salmon molecular surface.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 426 (char 425)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/2hhb.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"protein"},"children":[{"kind":"representation","params":{"type":"surface"},"children":[{"kind":"color","params":{"color":"salmon"}}]}]}]}]}]}]}]}}gen-surface-4ins invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 426 (char 425)Prompt: Load 4INS; render the protein as a salmon molecular surface.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 426 (char 425)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/4ins.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"protein"},"children":[{"kind":"representation","params":{"type":"surface"},"children":[{"kind":"color","params":{"color":"salmon"}}]}]}]}]}]}]}]}"}grd-disulfide-3ptb invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 623 (char 622)Prompt: Load 3PTB; protein as grey cartoon, and highlight the disulfide-bonded cysteines as yellow ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 623 (char 622)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/3ptb.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"protein"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_comp_id":"CYS"}}, "children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"yellow"}}]}]}]}]}]}]}]}grd-disulfide-4ins invalid JSON no JSON object found in outputPrompt: Load 4INS; protein as grey cartoon, and highlight the disulfide-bonded cysteines as yellow ball-and-stick.
Parser: no JSON object found in output
The model returned an empty response.
grd-ligand-1cbs-rea invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 618 (char 617)Prompt: Load 1CBS; show the protein as a grey cartoon and the REA as orange ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 618 (char 617)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1cbs.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"}},{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"label_asym_id":"B","label_comp_id":"REA"}}, "children":[{"kind":"representation","params":{"type":"ball_and_stick"}},{"kind":"color","params":{"color":"orange"}}]}]}]}]}]}]}}grd-ligand-1hho-hem invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 678 (char 677)Prompt: Load 1HHO; show the protein as a grey cartoon and the HEM as orange ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 678 (char 677)
{"root": {"kind": "root", "children": [{"kind": "download", "params": {"url": "https://files.rcsb.org/download/1hho.cif"}, "children": [{"kind": "parse", "params": {"format": "mmcif"}, "children": [{"kind": "structure", "params": {"type": "model"}, "children": [{"kind": "component", "params": {"selector": "polymer"}, "children": [{"kind": "representation", "params": {"type": "cartoon"}, "children": [{"kind": "color", "params": {"color": "gray"}}]}]}, {"kind": "component", "params": {"selector": {"auth_comp_id": "HEM"}}, "children": [{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [{"kind": "color", "params": {"color": "orange"}}]}]}]}]}]}]}]}grd-ligand-2hhb-hem invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 678 (char 677)Prompt: Load 2HHB; show the protein as a grey cartoon and the HEM as orange ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 678 (char 677)
{"root": {"kind": "root", "children": [{"kind": "download", "params": {"url": "https://files.rcsb.org/download/2hhb.cif"}, "children": [{"kind": "parse", "params": {"format": "mmcif"}, "children": [{"kind": "structure", "params": {"type": "model"}, "children": [{"kind": "component", "params": {"selector": "protein"}, "children": [{"kind": "representation", "params": {"type": "cartoon"}, "children": [{"kind": "color", "params": {"color": "gray"}}]}]}, {"kind": "component", "params": {"selector": {"auth_comp_id": "HEM"}}, "children": [{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [{"kind": "color", "params": {"color": "orange"}}]}]}]}]}]}]}]}grd-ligand-4ins-zn invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 622 (char 621)Prompt: Load 4INS; show the protein as a grey cartoon and the ZN as orange ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 622 (char 621)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/4ins.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"protein"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_comp_id":"ZN"}}, "children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"orange"}}]}]}]}]}]}]}]}int-001 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 1025 (char 1024)Prompt: In oxymyoglobin 1A6M, show the protein as a grey cartoon, His64 and the bound O2 as ball-and-stick, and draw the hydrogen bond from His64 NE2 to the O2 molecule's terminal oxygen (atom O2) as a dashed line labelled with its length.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 1025 (char 1024)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1a6m.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":[{"auth_asym_id":"A","auth_seq_id":64},{"auth_asym_id":"A","auth_seq_id":157}]},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"orange"}}]}]},{"kind":"primitives","params":{"color":"yellow","label_color":"yellow"},"children":[{"kind":"primitive","params":{"kind":"distance_measurement","start":{"auth_asym_id":"A","auth_seq_id":64,"label_atom_id":"NE2"},"end":{"auth_asym_id":"A","auth_seq_id":157,"label_atom_id":"O2"},"radius":0.06,"dash_length":0.15,"label_template":"{{distance}}"}}]}]}]}]}]}]}int-002 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 1201 (char 1200)Prompt: Load 1A6M with the protein as a grey cartoon. Show the heme and the proximal histidine as ball-and-stick and measure the distance from the heme iron to the histidine's coordinating nitrogen.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 1201 (char 1200)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1a6m.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"protein"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"A","auth_comp_id":"HEM"}},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"orange"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"A","auth_seq_id":93}},"children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"cyan"}}]}]},{"kind":"primitives","params":{"color":"yellow","label_color":"yellow"},"children":[{"kind":"primitive","params":{"kind":"distance_measurement","start":{"auth_asym_id":"A","auth_comp_id":"HEM","auth_atom_id":"FE"},"end":{"auth_asym_id":"A","auth_seq_id":93,"label_atom_id":"NE2"},"radius":0.06,"dash_length":0.15,"label_template":"{{distance}}"}}]}]}]}]}]}]}int-003 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 1268 (char 1267)Prompt: In trypsin (3PTB), show the protein as a grey cartoon and the catalytic triad (His57, Asp102, Ser195) as ball-and-stick. Draw the two triad hydrogen bonds as dashed lines with their lengths.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 1268 (char 1267)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/3ptb.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"protein"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":[{"auth_asym_id":"A","auth_seq_id":57},{"auth_asym_id":"A","auth_seq_id":102},{"auth_asym_id":"A","auth_seq_id":195}]},"children":[{"kind":"representation","params":{"type":"ball_and_stick"}}]},{"kind":"primitives","params":{"color":"yellow","label_color":"yellow"},"children":[{"kind":"primitive","params":{"kind":"distance_measurement","start":{"auth_asym_id":"A","auth_seq_id":57,"label_atom_id":"ND1"},"end":{"auth_asym_id":"A","auth_seq_id":102,"label_atom_id":"OD1"},"radius":0.06,"dash_length":0.15,"label_template":"{{distance}}"}},{"kind":"primitive","params":{"kind":"distance_measurement","start":{"auth_asym_id":"A","auth_seq_id":57,"label_atom_id":"NE2"},"end":{"auth_asym_id":"A","auth_seq_id":195,"label_atom_id":"OG"},"radius":0.06,"dash_length":0.15,"label_template":"{{distance}}"}}]}]}]}]}]}]}}int-004 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 615 (char 614)Prompt: Load 1A6M with the protein as a grey cartoon and show all the non-covalent interactions (hydrogen bonds, metal contacts) around the bound oxygen molecule.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 615 (char 614)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1a6m.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"grey"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"A","auth_comp_id":"OXY"}},"custom":{"molstar_show_non_covalent_interactions":true,"molstar_non_covalent_interactions_radius_ang":5}}]}]}]}]}]}]}int-005 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 615 (char 614)Prompt: Show trypsin 3PTB as a grey cartoon and display the interactions between the benzamidine inhibitor and the protein.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 615 (char 614)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/3ptb.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"protein"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]},{"kind":"component","params":{"selector":{"auth_asym_id":"A","auth_comp_id":"BEN"}},"custom":{"molstar_show_non_covalent_interactions":true,"molstar_non_covalent_interactions_radius_ang":5}}]}]}]}]}]}]}}int-006 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 667 (char 666)Prompt: Load haemoglobin 1HHO; show the protein as a 50% transparent surface and the heme groups as ball-and-stick.
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 667 (char 666)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/1hho.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"protein"},"children":[{"kind":"representation","params":{"type":"surface"},"children":[{"kind":"color","params":{"color":"gray"}},{"kind":"opacity","params":{"opacity":0.5}}]}]},{"kind":"component","params":{"selector":{"auth_comp_id":"HEM"}}, "children":[{"kind":"representation","params":{"type":"ball_and_stick"},"children":[{"kind":"color","params":{"color":"orange"}}]}]}]}]}]}]}]}res-cftr invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 515 (char 514)Prompt: show me the CFTR channel
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 515 (char 514)
{"root": {"kind": "root", "children": [{"kind": "download", "params": {"url": "https://files.rcsb.org/download/9mxl.cif"}, "children": [{"kind": "parse", "params": {"format": "mmcif"}, "children": [{"kind": "structure", "params": {"type": "model"}, "children": [{"kind": "component", "params": {"selector": "protein"}, "children": [{"kind": "representation", "params": {"type": "cartoon"}, "children": [{"kind": "color", "params": {"color": "white"}, "custom": {"molstar_color_theme_name": "chain-id"}}]}]}]}]}]}]}]}res-gfp invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 425 (char 424)Prompt: show green fluorescent protein from Aequorea victoria
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 425 (char 424)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/6L27.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"protein"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"green"}}]}]}]}]}]}]}]}res-lysozyme invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 462 (char 461)Prompt: Show me hen egg white lysozyme
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 462 (char 461)
{"root": {"kind": "root", "children": [{"kind": "download", "params": {"url": "https://files.rcsb.org/download/2vb1.cif"}, "children": [{"kind": "parse", "params": {"format": "mmcif"}, "children": [{"kind": "structure", "params": {"type": "model"}, "children": [{"kind": "component", "params": {"selector": "protein"}, "children": [{"kind": "representation", "params": {"type": "cartoon"}, "children": [{"kind": "color", "params": {"color": "gray"}}]}]}]}]}]}]}]}res-myoglobin invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 663 (char 662)Prompt: Show me sperm whale myoglobin
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 663 (char 662)
{"root": {"kind": "root", "children": [{"kind": "download", "params": {"url": "https://files.rcsb.org/download/5yce.cif"}, "children": [{"kind": "parse", "params": {"format": "mmcif"}, "children": [{"kind": "structure", "params": {"type": "model"}, "children": [{"kind": "component", "params": {"selector": "polymer"}, "children": [{"kind": "representation", "params": {"type": "cartoon"}, "children": [{"kind": "color", "params": {"color": "gray"}}]}]}, {"kind": "component", "params": {"selector": "ligand"}, "children": [{"kind": "representation", "params": {"type": "ball_and_stick"}, "children": [{"kind": "color", "params": {"color": "orange"}}]}]}]}]}]}]}]}]}}res-pcsk9 invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 424 (char 423)Prompt: show the structure of PCSK9
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 424 (char 423)
{"root":{"kind":"root","children":[{"kind":"download","params":{"url":"https://files.rcsb.org/download/7s5h.cif"},"children":[{"kind":"parse","params":{"format":"mmcif"},"children":[{"kind":"structure","params":{"type":"model"},"children":[{"kind":"component","params":{"selector":"polymer"},"children":[{"kind":"representation","params":{"type":"cartoon"},"children":[{"kind":"color","params":{"color":"gray"}}]}]}]}]}]}]}]}res-pde5a invalid JSON JSON parse error: Expecting ',' delimiter: line 1 column 462 (char 461)Prompt: I wanna see a structure of PDE5A
Parser: JSON parse error: Expecting ',' delimiter: line 1 column 462 (char 461)
{"root": {"kind": "root", "children": [{"kind": "download", "params": {"url": "https://files.rcsb.org/download/1tbf.cif"}, "children": [{"kind": "parse", "params": {"format": "mmcif"}, "children": [{"kind": "structure", "params": {"type": "model"}, "children": [{"kind": "component", "params": {"selector": "polymer"}, "children": [{"kind": "representation", "params": {"type": "cartoon"}, "children": [{"kind": "color", "params": {"color": "gray"}}]}]}]}]}]}]}]}gen-range-1lyz invalid MVS Invalid parameters for node of kind "component": Invalid value for parameter "selector":Prompt: Load 1LYZ; protein as grey cartoon, and show residues 40-80 of chain A as orange ball-and-stick.
Mol* validator:
Invalid parameters for node of kind "component":
Invalid value for parameter "selector":
"[object Object]" is not a valid value for literal type ("all" | "polymer" | "protein" | "nucleic" | "branched" | "ligand" | "ion" | "water" | "coarse")
Invalid value {"beg":40,"end":80} supplied to : (("all" | "polymer" | "protein" | "nucleic" | "branched" | "ligand" | "ion" | "water" | "coarse") | { label_entity_id?: string, label_asym_id?: string, auth_asym_id?: string, label_seq_id?: Integer, auth_seq_id?: Integer, pdbx_PDB_ins_code?: string, beg_label_seq_id?: Integer, end_label_seq_id?: Integer, beg_auth_seq_id?: Integer, end_auth_seq_id?: Integer, label_comp_id?: string, auth_comp_id?: string, residue_index?: Integer, label_atom_id?: string, auth_atom_id?: string, type_symbol?: string, atom_id?: Integer, atom_index?: Integer, instance_id?: string } | Array<{ label_entity_id?: string, label_asym_id?: string, auth_asym_id?: string, label_seq_id?: Integer, auth_seq_id?: Integer, pdbx_PDB_ins_code?: string, beg_label_seq_id?: Integer, end_label_seq_id?: Integer, beg_auth_seq_id?: Integer, end_auth_seq_id?: Integer, label_comp_id?: string, auth_comp_id?: string, residue_index?: Integer, label_atom_id?: string, auth_atom_id?: string, type_symbol?: string, atom_id?: Integer, atom_index?: Integer, instance_id?: string }>)/1: { label_entity_id?: string, label_asym_id?: string, auth_asym_id?: string, label_seq_id?: Integer, auth_seq_id?: Integer, pdbx_PDB_ins_code?: string, beg_label_seq_id?: Integer, end_label_seq_id?: Integer, beg_auth_seq_id?: Integer, end_auth_seq_id?: Integer, label_comp_id?: string, auth_comp_id?: string, residue_index?: Integer, label_atom_id?: string, auth_atom_id?: string, type_symbol?: string, atom_id?: Integer, atom_index?: Integer, instance_id?: string }/auth_seq_id: Integer
Invalid value {"auth_asym_id":"A","auth_seq_id":{"beg":40,"end":80}} supplied to : (("all" | "polymer" | "protein" | "nucleic" | "branched" | "ligand" | "ion" | "water" | "coarse") | { label_entity_id?: string, label_asym_id?: string, auth_asym_id?: string, label_seq_id?: Integer, auth_seq_id?: Integer, pdbx_PDB_ins_code?: string, beg_label_seq_id?: Integer, end_label_seq_id?: Integer, beg_auth_seq_id?: Integer, end_auth_seq_id?: Integer, label_comp_id?: string, auth_comp_id?: string, residue_index?: Integer, label_atom_id?: string, auth_atom_id?: string, type_symbol?: string, atom_id?: Integer, atom_index?: Integer, instance_id?: string } | Array<{ label_entity_id?: string, label_asym_id?: string, auth_asym_id?: string, label_seq_id?: Integer, auth_seq_id?: Integer, pdbx_PDB_ins_code?: string, beg_label_seq_id?: Integer, end_label_seq_id?: Integer, beg_auth_seq_id?: Integer, end_auth_seq_id?: Integer, label_comp_id?: string, auth_comp_id?: string, residue_index?: Integer, label_atom_id?: string, auth_atom_id?: string, type_symbol?: string, atom_id?: Integer, atom_index?: Integer, instance_id?: string }>)/2: Array<{ label_entity_id?: string, label_asym_id?: string, auth_asym_id?: string, label_seq_id?: Integer, auth_seq_id?: Integer, pdbx_PDB_ins_code?: string, beg_label_seq_id?: Integer, end_label_seq_id?: Integer, beg_auth_seq_id?: Integer, end_auth_seq_id?: Integer, label_comp_id?: string, auth_comp_id?: string, residue_index?: Integer, label_atom_id?: string, auth_atom_id?: string, type_symbol?: string, atom_id?: Integer, atom_index?: Integer, instance_id?: string }>{
"root": {
"kind": "root",
"children": [
{
"kind": "download",
"params": {
"url": "https://files.rcsb.org/download/1lyz.cif"
},
"children": [
{
"kind": "parse",
"params": {
"format": "mmcif"
},
"children": [
{
"kind": "structure",
"params": {
"type": "model"
},
"children": [
{
"kind": "component",
"params": {
"selector": "protein"
},
"children": [
{
"kind": "representation",
"params": {
"type": "cartoon"
},
"children": [
{
"kind": "color",
"params": {
"color": "grey"
}
}
]
}
]
},
{
"kind": "component",
"params": {
"selector": {
"auth_asym_id": "A",
"auth_seq_id": {
"beg": 40,
"end": 80
}
}
},
"children": [
{
"kind": "representation",
"params": {
"type": "ball_and_stick"
},
"children": [
{
"kind": "color",
"params": {
"color": "orange"
}
}
]
}
]
}
]
}
]
}
]
}
]
}
}